docs: correct the apm-only change after a five-agent review

A five-agent review of 718c79a and d2480b8 found no skill, agent or hook
regressions (39 skills before and after) and confirmed both hook removals
are genuinely moot -- verified against the tree, not taken on the commit's
word. It did find one functional regression (fixed separately) and this
documentation drift.

Counting errors, all from a git pathspec `*` crossing `/`:
  - 17 .bats files shipped to consumers is really 10; 17 counted tracked
    paths merely containing /tests/, one of them a template asset
  - "roughly 88s off every push" is ~92.4s; 88 omitted validate-plugins
  - "roughly 70% of each plugin remains live" holds only for kyberforge;
    the real spread is 44.3% (bin) to 70.6%, now a table
  - the pre-push enforcement row was half-corrected: 33 entries stood
    unstruck (now 27) and 14 -> 11 switched counting basis mid-sentence
  - the root .claude-plugin/plugin.json was described as "kept"; it has
    never been tracked

gates.md said "Ten hooks" above a nine-row table (11 was decremented for
one removal, not two), and "both need the claude CLI" for one remaining
validator. Its pretty-format-json exclude rationale claimed six
alternations expanding to sixteen files in a passage headed "Mind which
number you are quoting" -- four alternations, two live files; the two
dead ones are dropped from the pattern. check-useless-excludes could not
catch this: it only flags an exclude matching nothing at all.

ADR-0024 cited ADR-0006 for a patch-bump rule it does not contain and
which ADR-0015 explicitly retired; stated apm's marketplace probe order
backwards (.claude-plugin/ is the last candidate, not the first, so the
earlier .github/plugin/ deletion only demoted resolution); undercounted
apm's skill-deploying targets as seven when there are fifteen; and never
recorded that validate-plugins was removed. The symlink hedge is resolved:
apm_cli/security/gate.py's ignore_non_content() drops symlinks silently on
deploy while apm_modules/ materialization dereferences them, so content
survives that far and vanishes at install. Accepted with no replacement
guard, per decision -- kyberforge/docs/hooks.md previously asserted a
guard that had been deleted with its script.

Four plugin READMEs still advertised `claude plugin install`; ADRs 0001,
0006, 0013, 0014, 0015 and 0019 described deleted machinery in the present
tense, 0019 most consequentially as the live justification for the
SessionStart hook's .apm/ path. CONTEXT.md's "apm package" entry forbade
"plugin" while using it in its own body, and "Output profile" lost the
antecedent for "one catalogue serves both".

run-tests.sh gains the .claude/skills/ exclusion run-bats.sh already had.
Latent today -- no test-*.sh lives under any .apm/skills/*/tests/ -- but
apm now deploys those directories, so one would be discovered twice.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01YR2CjVumUbEGWcMikcoXBD

tests/run-tests.sh

@@ -141,6 +141,14 @@ run_bats
 # apm_modules/ is excluded for the same reason tests/run-bats.sh excludes it:
 # `apm install` materializes dependency copies of this repo's own plugins there,
 # and re-running a dependency's tests re-runs what plugins/ already covers.
+#
+# .claude/skills/ is excluded for the same reason, one install step later. apm
+# deploys skills there straight from each plugin's `.apm/` tree, `tests/` dirs
+# and all, so any `<skill>/tests/test-*.sh` file under plugins/ would also land
+# at .claude/skills/<name>/tests/ and be discovered and run a second time. No
+# such file exists today -- the skill suites are all .bats, where run-bats.sh
+# already hit this -- so the exclusion is symmetry with its sibling, kept here
+# so the first shell suite added under a skill does not reintroduce it.
 SCRIPTS=()
 while IFS= read -r script; do
   SCRIPTS+=("$script")
@@ -149,6 +157,7 @@ done < <(
     -not -path "*/.git/*" \
     -not -path "*/.claude/worktrees/*" \
     -not -path "*/apm_modules/*" \
+    -not -path "*/.claude/skills/*" \
     | sort
 )