fix(kyberforge): bridge apm content to Claude Code's flat plugin discovery

Claude Code's (and Copilot's) native plugin installer has zero awareness of
.apm/ nesting -- it convention-scans only flat skills/, agents/, commands/,
hooks.json at each plugin's root. Confirmed via strings on the installed
claude binary and live installs of git@holocron/gitea@holocron/kyberforge@
holocron, all reporting Skills(0) Agents(0) Hooks(0) post ADR-0015's apm
conversion. Root cause (apm_cli/core/plugin_manifest.py): apm's plugin.json
compiler deliberately strips skills/agents/commands keys, assuming the host
already auto-discovers those convention directories -- it has no model of
.apm/ being host-visible at all. Separately, apm's own bundle exporter
(apm_cli/bundle/plugin_exporter.py, behind `apm pack --format plugin`)
implements the correct .apm/ -> flat mapping, but only ever targeted
build/<name>-<version>/, a path nothing in marketplace.json's source: points
at.

scripts/sync-plugin-content.sh wraps that bundle exporter and copies its
agents/, skills/, commands/, instructions/, extensions/, and merged
hooks.json back into each plugin's own root as a second tracked
compiled-output category -- same governance status as
.claude-plugin/plugin.json: generated from .apm/, never hand-edited. tests/
subdirectories are excluded from the mirror (dev fixtures, not host-visible
runtime content; several hardcode a relative repo-root walk-up sized for the
.apm/-nested depth, which breaks when duplicated one level shallower).
Applied for real across all 6 plugins and verified two ways: `claude plugin
validate --strict` passes on every real plugin directory, and a live
`claude --plugin-dir <path> -p "list skills/agents"` behavioral test
confirms content is now actually discovered.

Also, from the same issue #90 review round:
- scripts/check-manifests.sh pointed at each plugin's root-level plugin.json
  (checking skills/hooks/mcpServers/agents pointer fields) -- that file was a
  stale near-duplicate of .claude-plugin/plugin.json nothing else read or
  wrote, now deleted across all 6 plugins. check-manifests.sh is rewritten to
  validate .claude-plugin/plugin.json instead, and drops the pointer-field
  checks entirely (nothing to check -- those fields are correctly absent by
  design). Content-presence drift is now check-plugin-content-sync's job, a
  new pre-push hook wired in .pre-commit-config.yaml.

docs/adr/0017 records the root cause and decision in full, including two
rejected alternatives (patching plugin.json's path fields directly -- apm's
compiler strips them on every run; pointing marketplace.json at apm pack's
build/ output -- a version-suffixed non-source directory nothing can install
from without an extra build step). ADR-0015 and CONTEXT.md are updated to
point at it.

Refs: #90

plugins/bin/skills/improve-codebase-architecture/DEEPENING.md

@@ -0,0 +1,37 @@
+# Deepening
+
+How to deepen a cluster of shallow modules safely, given its dependencies. Assumes the vocabulary in [LANGUAGE.md](LANGUAGE.md) — **module**, **interface**, **seam**, **adapter**.
+
+## Dependency categories
+
+When assessing a candidate for deepening, classify its dependencies. The category determines how the deepened module is tested across its seam.
+
+### 1. In-process
+
+Pure computation, in-memory state, no I/O. Always deepenable — merge the modules and test through the new interface directly. No adapter needed.
+
+### 2. Local-substitutable
+
+Dependencies that have local test stand-ins (PGLite for Postgres, in-memory filesystem). Deepenable if the stand-in exists. The deepened module is tested with the stand-in running in the test suite. The seam is internal; no port at the module's external interface.
+
+### 3. Remote but owned (Ports & Adapters)
+
+Your own services across a network boundary (microservices, internal APIs). Define a **port** (interface) at the seam. The deep module owns the logic; the transport is injected as an **adapter**. Tests use an in-memory adapter. Production uses an HTTP/gRPC/queue adapter.
+
+Recommendation shape: *"Define a port at the seam, implement an HTTP adapter for production and an in-memory adapter for testing, so the logic sits in one deep module even though it's deployed across a network."*
+
+### 4. True external (Mock)
+
+Third-party services (Stripe, Twilio, etc.) you don't control. The deepened module takes the external dependency as an injected port; tests provide a mock adapter.
+
+## Seam discipline
+
+- **One adapter means a hypothetical seam. Two adapters means a real one.** Don't introduce a port unless at least two adapters are justified (typically production + test). A single-adapter seam is just indirection.
+- **Internal seams vs external seams.** A deep module can have internal seams (private to its implementation, used by its own tests) as well as the external seam at its interface. Don't expose internal seams through the interface just because tests use them.
+
+## Testing strategy: replace, don't layer
+
+- Old unit tests on shallow modules become waste once tests at the deepened module's interface exist — delete them.
+- Write new tests at the deepened module's interface. The **interface is the test surface**.
+- Tests assert on observable outcomes through the interface, not internal state.
+- Tests should survive internal refactors — they describe behaviour, not implementation. If a test has to change when the implementation changes, it's testing past the interface.