fix(kyberforge): bridge apm content to Claude Code's flat plugin discovery

Claude Code's (and Copilot's) native plugin installer has zero awareness of
.apm/ nesting -- it convention-scans only flat skills/, agents/, commands/,
hooks.json at each plugin's root. Confirmed via strings on the installed
claude binary and live installs of git@holocron/gitea@holocron/kyberforge@
holocron, all reporting Skills(0) Agents(0) Hooks(0) post ADR-0015's apm
conversion. Root cause (apm_cli/core/plugin_manifest.py): apm's plugin.json
compiler deliberately strips skills/agents/commands keys, assuming the host
already auto-discovers those convention directories -- it has no model of
.apm/ being host-visible at all. Separately, apm's own bundle exporter
(apm_cli/bundle/plugin_exporter.py, behind `apm pack --format plugin`)
implements the correct .apm/ -> flat mapping, but only ever targeted
build/<name>-<version>/, a path nothing in marketplace.json's source: points
at.

scripts/sync-plugin-content.sh wraps that bundle exporter and copies its
agents/, skills/, commands/, instructions/, extensions/, and merged
hooks.json back into each plugin's own root as a second tracked
compiled-output category -- same governance status as
.claude-plugin/plugin.json: generated from .apm/, never hand-edited. tests/
subdirectories are excluded from the mirror (dev fixtures, not host-visible
runtime content; several hardcode a relative repo-root walk-up sized for the
.apm/-nested depth, which breaks when duplicated one level shallower).
Applied for real across all 6 plugins and verified two ways: `claude plugin
validate --strict` passes on every real plugin directory, and a live
`claude --plugin-dir <path> -p "list skills/agents"` behavioral test
confirms content is now actually discovered.

Also, from the same issue #90 review round:
- scripts/check-manifests.sh pointed at each plugin's root-level plugin.json
  (checking skills/hooks/mcpServers/agents pointer fields) -- that file was a
  stale near-duplicate of .claude-plugin/plugin.json nothing else read or
  wrote, now deleted across all 6 plugins. check-manifests.sh is rewritten to
  validate .claude-plugin/plugin.json instead, and drops the pointer-field
  checks entirely (nothing to check -- those fields are correctly absent by
  design). Content-presence drift is now check-plugin-content-sync's job, a
  new pre-push hook wired in .pre-commit-config.yaml.

docs/adr/0017 records the root cause and decision in full, including two
rejected alternatives (patching plugin.json's path fields directly -- apm's
compiler strips them on every run; pointing marketplace.json at apm pack's
build/ output -- a version-suffixed non-source directory nothing can install
from without an extra build step). ADR-0015 and CONTEXT.md are updated to
point at it.

Refs: #90
This commit is contained in:
2026-08-13 16:59:03 +00:00
parent 7910b8b12c
commit 38f1ba4e03
217 changed files with 14455 additions and 175 deletions

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source_keys: []
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# references/
## deployment-modes.md
Agent scope hierarchy, precedence rules, and per-scope restrictions. Covers: which fields are silently ignored for plugin agents (Claude Code and Copilot CLI), scoped identifiers for plugin subdirectory agents, cache isolation behaviour, and Copilot CLI path conventions. Loaded conditionally from SKILL.md when the destination is a plugin directory.
## scripts.md
Conventions for the `new-agent.sh` scaffold script and any future scripts added to this skill. Covers: what scripts should and should not do, file placement, error handling, template variable conventions, and the no-interactive-prompts rule.
## sources.md
Research provenance record for this skill. Lists the upstream research sources (claude-code-plugins and github-copilot-plugins research docs) that informed SKILL.md, the templates, and the deployment-modes reference. Used by `skill-audit` to validate the provenance chain.

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source_keys:
- context7-websites-code-claude
- claude-code-plugins-docs
- claude-code-subagents-docs
- context7-github-en-copilot
- github-custom-agents-configuration
- github-cli-plugin-reference
---
# Agent Deployment Modes
Agent definitions deploy at three scopes and behave differently at each. The scope determines which fields are honoured, where files must live, and what identifiers users invoke.
## Scope hierarchy and precedence
| Scope | Claude Code path | Copilot CLI path | Who it affects |
|---|---|---|---|
| User | `~/.claude/agents/` | `~/.copilot/agents/` | All sessions for this user |
| Project | `.claude/agents/` | `.github/agents/` or `.copilot/agents/` | This repo only |
| Plugin/APM | `<package-root>/.apm/agents/<name>.agent.md` — single vendor-neutral file, `apm compile` emits it to both targets | *(same file)* | Sessions with the plugin/package installed |
When the same agent `name` appears at multiple scopes, **user scope wins over project scope wins over plugin scope** in Claude Code. In Copilot CLI, repo-level agents override enterprise and org-level; home-directory (user) agents override repo-level on name collision.
## Plugin scope restrictions
Plugin/APM agents (`.apm/agents/<name>.agent.md`) carry only `name`, `description`, optionally `model`, and optionally `source_keys` (provenance metadata, not a runtime field — silently ignored by both harnesses) in frontmatter — full stop (see ADR-0016). `apm compile` copies this frontmatter verbatim to both the Claude Code and Copilot CLI compile targets with no per-target integrator: Claude's `tools:` (space-separated string) and Copilot's `tools:` (alias list) are incompatible vocabularies, and Claude-only fields have no Copilot equivalent, so any harness-specific value is guaranteed wrong on at least one target.
This makes the old "silently ignored at plugin scope" framing moot. It's not that `hooks`, `mcpServers`, `permissionMode`, `tools`, `isolation`, `maxTurns`, `effort`, `memory`, `disallowedTools`, `skills`, `color`, `initialPrompt`, or `background` are merely ignored at this scope — they are never written to the file at all. Copy the agent to `.claude/agents/` (project scope) or `~/.claude/agents/` (user scope) to use any of them.
## Scoped identifiers (Claude Code plugin agents only)
Plugin agents in **subdirectories** get compound identifiers:
```
plugins/my-plugin/.apm/agents/review/security.agent.md → my-plugin:review:security
```
Users must invoke with `@agent-my-plugin:review:security`. **Keep agents flat in `agents/` to avoid this** — subdirectory nesting is rarely worth the UX cost.
At project and user scope, subdirectory path does not affect the agent's name.
## Cache isolation
When a plugin is installed, its directory is copied to a cache. **Any path that leaves the agent's plugin directory breaks post-install.** Agent definition files must be self-contained — they cannot reference scripts, templates, or shared files outside the plugin.
Agents at project or user scope are read directly from disk; cache isolation does not apply.
## Copilot CLI path conventions
| Scope | Expected path | Notes |
|---|---|---|
| User | `~/.copilot/agents/<name>.agent.md` | Home directory |
| Project | `.github/agents/<name>.agent.md` | Standard; also `.copilot/agents/` |
| Plugin/APM | `<package-root>/.apm/agents/<name>.agent.md` | Not a Copilot-only file — this is the single vendor-neutral source `apm compile` reads for the Copilot CLI target |
The `.agent.md` extension is **mandatory** for real Copilot CLI files (project/user scope) — Copilot CLI does not pick up plain `.md` files in the `agents/` directory. The plugin/APM source file also uses `.agent.md` by convention, since it compiles to Copilot CLI too, but it is not itself a Copilot file.

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# Scripts Reference
Conventions for `scripts/new-agent.sh` and any future scripts in this skill.
## Contract
All scripts in this skill must follow these rules:
- **No interactive prompts** — agents run non-interactive; blocking on TTY input hangs indefinitely. Accept all input via positional arguments, flags, or environment variables.
- **Structured output** — file paths and status messages to stderr; nothing to stdout unless a downstream tool needs to consume it.
- **Idempotent** — "create if not exists" per file. The scaffold script skips any file that already exists; agents may safely re-run it.
- **Meaningful exit codes** — `0` success, `1` invalid arguments or precondition failure. Document in `--help`.
- **Self-contained** — no external package installs at runtime. The script uses only bash builtins and POSIX tools (`sed`, `mkdir`, `cat`).
## Template variables
The scaffold script uses `sed "s/AGENT_NAME/$AGENT_NAME/g"` to substitute the agent name into templates. Template files must use `AGENT_NAME` (all caps, no delimiters) as the substitution token.
Do not add additional substitution tokens unless you update both the template files and the script in the same edit pass.
## File placement
The script creates files at paths determined by scope detection (plugin/APM / project / user). Scope is resolved by walking up from the root directory: a `type:`-bearing `apm.yml` at or above the root marks the package root (plugin/APM scope, single file); an `apm.yml` without a `type:` field is a marketplace-only manifest and is skipped, the walk continues upward. If no such `apm.yml` is found, the root resolving to exactly `$HOME` is user scope; anything else is project scope. If scope detection logic changes, update the `new-agent.sh` usage comment and `SKILL.md` Step 1 scope detection description in the same pass.
## Error messages
On failure, state: what went wrong, what was expected, what to try. Example:
```
Error: agent-name must use lowercase letters, numbers, and hyphens only.
No leading, trailing, or consecutive hyphens.
Received: 'My_Agent'
```
Vague errors leave agents unable to self-correct.
## --help output
Keep `--help` concise — it may enter the agent's context window. Include: usage line, argument descriptions with scope detection table, exit codes. Omit prose explanations.

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---
source_keys:
- context7-websites-code-claude
- claude-code-plugins-docs
- claude-code-subagents-docs
- context7-github-en-copilot
- github-custom-agents-configuration
- github-cli-plugin-reference
- github-plugins-creating
- github-plugins-finding-installing
- github-plugins-marketplace
- github-sdk-custom-agents
---
# Sources
## context7-websites-code-claude
- **URL:** context7:/websites/code_claude
- **Research doc:** plugins/kyberforge/docs/research/docs/claude-code-plugins/sources.md
- **Description:** Official Claude Code documentation site indexed by Context7 — plugin manifest schema, subagent definition types, marketplace JSON format, agent markdown file format
- **Contributing files:** SKILL.md, references/deployment-modes.md
- **Status:** `extracted`
## claude-code-plugins-docs
- **URL:** https://code.claude.com/docs/en/plugins
- **Research doc:** plugins/kyberforge/docs/research/docs/claude-code-plugins/sources.md
- **Description:** Official Claude Code plugin authoring guide — plugin structure, manifest fields, loading methods, skill namespacing, agent activation, marketplace submission
- **Contributing files:** SKILL.md, references/deployment-modes.md
- **Status:** `extracted`
## claude-code-subagents-docs
- **URL:** https://code.claude.com/docs/en/sub-agents
- **Research doc:** plugins/kyberforge/docs/research/docs/claude-code-plugins/sources.md
- **Description:** Official Claude Code subagent reference — definition format, all frontmatter fields, scope priority, built-in agents, CLI flags, environment variables, known limitations
- **Contributing files:** SKILL.md, references/deployment-modes.md
- **Status:** `extracted`
## context7-github-en-copilot
- **URL:** context7:/websites/github_en_copilot
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** Official GitHub Copilot documentation indexed by Context7; covers CLI plugins, custom agents, SDK, and marketplace
- **Contributing files:** SKILL.md, references/deployment-modes.md
- **Status:** `extracted`
## github-custom-agents-configuration
- **URL:** https://docs.github.com/en/copilot/reference/custom-agents-configuration
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** Reference for cloud and IDE custom agent definition format — frontmatter fields, tool aliases, MCP server config, secrets interpolation, scoping hierarchy
- **Contributing files:** SKILL.md, references/deployment-modes.md
- **Status:** `extracted`
## github-cli-plugin-reference
- **URL:** https://docs.github.com/en/copilot/reference/copilot-cli-reference/cli-plugin-reference
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** Full CLI plugin reference — plugin.json schema, marketplace.json schema, all CLI commands and flags, install specification formats, loading precedence, env vars, LSP config
- **Contributing files:** SKILL.md, references/deployment-modes.md
- **Status:** `extracted`
## github-plugins-creating
- **URL:** https://docs.github.com/en/copilot/how-tos/copilot-cli/customize-copilot/plugins-creating
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** How-to for creating Copilot CLI plugins — plugin structure, agent and skill authoring, hooks format, MCP config, development lifecycle
- **Contributing files:** SKILL.md
- **Status:** `extracted`
## github-plugins-finding-installing
- **URL:** https://docs.github.com/en/copilot/how-tos/copilot-cli/customize-copilot/plugins-finding-installing
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** User-facing guide to discovering and installing CLI plugins — marketplace browsing commands, install/update/uninstall workflow
- **Contributing files:** (none)
- **Status:** `extracted`
## github-plugins-marketplace
- **URL:** https://docs.github.com/en/copilot/how-tos/copilot-cli/customize-copilot/plugins-marketplace
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** How-to for creating and publishing a plugin marketplace — marketplace.json structure, hosting options, registration commands
- **Contributing files:** (none)
- **Status:** `extracted`
## github-sdk-custom-agents
- **URL:** https://docs.github.com/en/copilot/how-tos/copilot-sdk/features/custom-agents
- **Research doc:** plugins/kyberforge/docs/research/docs/github-copilot-plugins/sources.md
- **Description:** SDK custom agent API — CustomAgentConfig fields in all five languages, session config, sub-agent lifecycle events, tool scoping, permission handling
- **Contributing files:** (none)
- **Status:** `extracted`