fix(kyberforge): bridge apm content to Claude Code's flat plugin discovery
Claude Code's (and Copilot's) native plugin installer has zero awareness of .apm/ nesting -- it convention-scans only flat skills/, agents/, commands/, hooks.json at each plugin's root. Confirmed via strings on the installed claude binary and live installs of git@holocron/gitea@holocron/kyberforge@ holocron, all reporting Skills(0) Agents(0) Hooks(0) post ADR-0015's apm conversion. Root cause (apm_cli/core/plugin_manifest.py): apm's plugin.json compiler deliberately strips skills/agents/commands keys, assuming the host already auto-discovers those convention directories -- it has no model of .apm/ being host-visible at all. Separately, apm's own bundle exporter (apm_cli/bundle/plugin_exporter.py, behind `apm pack --format plugin`) implements the correct .apm/ -> flat mapping, but only ever targeted build/<name>-<version>/, a path nothing in marketplace.json's source: points at. scripts/sync-plugin-content.sh wraps that bundle exporter and copies its agents/, skills/, commands/, instructions/, extensions/, and merged hooks.json back into each plugin's own root as a second tracked compiled-output category -- same governance status as .claude-plugin/plugin.json: generated from .apm/, never hand-edited. tests/ subdirectories are excluded from the mirror (dev fixtures, not host-visible runtime content; several hardcode a relative repo-root walk-up sized for the .apm/-nested depth, which breaks when duplicated one level shallower). Applied for real across all 6 plugins and verified two ways: `claude plugin validate --strict` passes on every real plugin directory, and a live `claude --plugin-dir <path> -p "list skills/agents"` behavioral test confirms content is now actually discovered. Also, from the same issue #90 review round: - scripts/check-manifests.sh pointed at each plugin's root-level plugin.json (checking skills/hooks/mcpServers/agents pointer fields) -- that file was a stale near-duplicate of .claude-plugin/plugin.json nothing else read or wrote, now deleted across all 6 plugins. check-manifests.sh is rewritten to validate .claude-plugin/plugin.json instead, and drops the pointer-field checks entirely (nothing to check -- those fields are correctly absent by design). Content-presence drift is now check-plugin-content-sync's job, a new pre-push hook wired in .pre-commit-config.yaml. docs/adr/0017 records the root cause and decision in full, including two rejected alternatives (patching plugin.json's path fields directly -- apm's compiler strips them on every run; pointing marketplace.json at apm pack's build/ output -- a version-suffixed non-source directory nothing can install from without an extra build step). ADR-0015 and CONTEXT.md are updated to point at it. Refs: #90
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---
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source_keys:
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- context7-websites-code-claude
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- claude-code-plugins-docs
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- claude-code-subagents-docs
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- context7-github-en-copilot
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- github-custom-agents-configuration
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- github-cli-plugin-reference
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---
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# Agent Deployment Modes
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Agent definitions deploy at three scopes and behave differently at each. The scope determines which fields are honoured, where files must live, and what identifiers users invoke.
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## Scope hierarchy and precedence
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| Scope | Claude Code path | Copilot CLI path | Who it affects |
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|---|---|---|---|
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| User | `~/.claude/agents/` | `~/.copilot/agents/` | All sessions for this user |
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| Project | `.claude/agents/` | `.github/agents/` or `.copilot/agents/` | This repo only |
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| Plugin/APM | `<package-root>/.apm/agents/<name>.agent.md` — single vendor-neutral file, `apm compile` emits it to both targets | *(same file)* | Sessions with the plugin/package installed |
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When the same agent `name` appears at multiple scopes, **user scope wins over project scope wins over plugin scope** in Claude Code. In Copilot CLI, repo-level agents override enterprise and org-level; home-directory (user) agents override repo-level on name collision.
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## Plugin scope restrictions
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Plugin/APM agents (`.apm/agents/<name>.agent.md`) carry only `name`, `description`, optionally `model`, and optionally `source_keys` (provenance metadata, not a runtime field — silently ignored by both harnesses) in frontmatter — full stop (see ADR-0016). `apm compile` copies this frontmatter verbatim to both the Claude Code and Copilot CLI compile targets with no per-target integrator: Claude's `tools:` (space-separated string) and Copilot's `tools:` (alias list) are incompatible vocabularies, and Claude-only fields have no Copilot equivalent, so any harness-specific value is guaranteed wrong on at least one target.
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This makes the old "silently ignored at plugin scope" framing moot. It's not that `hooks`, `mcpServers`, `permissionMode`, `tools`, `isolation`, `maxTurns`, `effort`, `memory`, `disallowedTools`, `skills`, `color`, `initialPrompt`, or `background` are merely ignored at this scope — they are never written to the file at all. Copy the agent to `.claude/agents/` (project scope) or `~/.claude/agents/` (user scope) to use any of them.
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## Scoped identifiers (Claude Code plugin agents only)
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Plugin agents in **subdirectories** get compound identifiers:
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```
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plugins/my-plugin/.apm/agents/review/security.agent.md → my-plugin:review:security
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```
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Users must invoke with `@agent-my-plugin:review:security`. **Keep agents flat in `agents/` to avoid this** — subdirectory nesting is rarely worth the UX cost.
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At project and user scope, subdirectory path does not affect the agent's name.
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## Cache isolation
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When a plugin is installed, its directory is copied to a cache. **Any path that leaves the agent's plugin directory breaks post-install.** Agent definition files must be self-contained — they cannot reference scripts, templates, or shared files outside the plugin.
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Agents at project or user scope are read directly from disk; cache isolation does not apply.
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## Copilot CLI path conventions
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| Scope | Expected path | Notes |
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|---|---|---|
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| User | `~/.copilot/agents/<name>.agent.md` | Home directory |
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| Project | `.github/agents/<name>.agent.md` | Standard; also `.copilot/agents/` |
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| Plugin/APM | `<package-root>/.apm/agents/<name>.agent.md` | Not a Copilot-only file — this is the single vendor-neutral source `apm compile` reads for the Copilot CLI target |
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The `.agent.md` extension is **mandatory** for real Copilot CLI files (project/user scope) — Copilot CLI does not pick up plain `.md` files in the `agents/` directory. The plugin/APM source file also uses `.agent.md` by convention, since it compiles to Copilot CLI too, but it is not itself a Copilot file.
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