docs: correct the claims this review found false

AGENTS.md told an offline agent to push with SKIP=apm-marketplace-check and
asserted that hook was "the only one whose failure mode is 'no network'".
Running all 12 pre-push hooks under a network namespace shows two fail, for
one shared cause: apm-pack-check-clean resolves the same remote entry. An
exact pin does not remove the ls-remote, so both hooks are named now.

AGENTS.md also said everything in a plugin root except .apm/ is generated.
Plugin roots carry hand-authored README.md, docs/, bin/, sources.md and
.mcp.json, so an agent would hunt for an .apm/ source that does not exist or
refuse the edit. The rule is positional: immunity belongs to the plugin root,
and anything inside a mirrored directory is still rm -rf'd.

ADR-0017 said apm strips a hooks field. The real loop is (agents, skills,
commands, instructions) -- hooks absent, instructions never mentioned -- and
it can never fire, because synthesize_plugin_json_from_apm_yml only emits the
eight identity fields. The decision stands; the mechanism was overstated. Its
mcpServers amendment is rewritten for the pointer payload and now records the
real reason: inlining bypassed apm's credential sanitizer.

ADR-0015's owner.email and version-pin passages are corrected against the apm
source, and ADR-0016 gains the disallowedTools amendment. agent-audit's
allowlist is data, so it gains disallowedTools too -- the ADR and the
validator that enforces it had come apart.

architecture.md described a root CLAUDE.md that imports two files (it imports
one, plus an RTK block) and pointed at an ADR index that does not exist.
Seven skill READMEs listed tests/ files the mirror strips, promising installed
users files their install lacks; those rows are marked source-only, with the
depth-4 template tests explicitly called out as surviving. And
plugins/kyberforge/hooks/README.md, deleted during the conversion and
preserved nowhere, is restored to a path the mirror does not own -- verified
by running a sync against a scratch copy.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01X7GvKuJfy2WrdBmUttV4DT

AGENTS.md

@@ -9,12 +9,16 @@ This repo is the global AI development configuration repository — the authorit
 
 ## Edit `.apm/`, never the flat mirror
 
-Inside a plugin, `plugins/<name>/.apm/` is the **only** hand-edited content source. Everything else in a plugin root is generated:
+Inside a plugin, `plugins/<name>/.apm/` is the **only** hand-edited source for **plugin content** — the skills, agents, commands, instructions, extensions and hooks a host discovers. Everything in a plugin root that mirrors an `.apm/` primitive, plus both `plugin.json` manifests, is generated:
 
 - `scripts/sync-plugin-content.sh` generates the flat `plugins/<name>/{skills,agents,commands,instructions,extensions}/` directories and the merged `plugins/<name>/hooks/hooks.json` (ADR-0017)
 - `apm pack` generates both per-plugin manifests — `plugins/<name>/.claude-plugin/plugin.json` and `plugins/<name>/.github/plugin/plugin.json` — and **two of the three** root marketplace manifests: `.claude-plugin/marketplace.json` (apm's `claude` output profile) and `.agents/plugins/marketplace.json` (its `codex` profile, a differently-shaped file) (ADR-0015)
 - `scripts/sync-marketplace-mirror.sh` generates the third, `.github/plugin/marketplace.json` — Copilot CLI's legacy manifest path. **No apm output profile targets it**: apm ships exactly two marketplace output profiles, `claude` and `codex` (documented in `plugins/kyberforge/.apm/skills/apm-workflow/references/marketplace.md`). The mirror is a byte-identical copy of `.claude-plugin/marketplace.json`, gated by the `check-marketplace-mirror-sync` pre-push hook. Do not expect `apm pack` to refresh it — that assumption is exactly the drift this pair exists to prevent
 
+**A plugin root is not wholly generated.** Material that is not an `.apm/` primitive is hand-authored there and no compiler touches it: `README.md`, `docs/`, `bin/`, `sources.md`, `.mcp.json`, plus per-plugin extras like `plugins/git/config.example.json`, `plugins/gitea/references/` and `plugins/bin/evals/`. Edit those in place — they have no `.apm/` source, and looking for one wastes a search. The rule is per-path, not per-directory: `plugins/<name>/skills/` is generated, `plugins/<name>/docs/` is not. `docs/spec/architecture.md` carries the same carve-out.
+
+One qualification: "hand-authored, untouched" holds only at the plugin *root*. A file placed **inside** a mirrored directory is destroyed — `sync_dir` runs `rm -rf "$dst"` before every copy, so a `README.md` under `plugins/<name>/hooks/` or `plugins/<name>/skills/` is deleted on the next sync whether or not `.apm/` has a counterpart. Put root-level plugin documentation in `docs/`, never in a mirrored directory.
+
 Nothing labels a generated file as generated — `plugins/kyberforge/skills/forge/SKILL.md` is byte-identical to its `.apm/` original, with no marker in either. Check the path before you edit. An edit to the mirror is discarded by the next sync and is reported as drift by the `check-plugin-content-sync` pre-push hook, which is the earliest anyone finds out. Details in `docs/spec/architecture.md`.
 
 ## Prefer plugin skills over raw shell
@@ -35,9 +39,10 @@ Fall back to raw shell only when no skill covers it.
 - Install the `apm` CLI — four pre-push hooks shell out to it: `apm-marketplace-check`, `apm-audit-ci`, `apm-pack-check-clean`, and `check-plugin-content-sync` (via `scripts/sync-plugin-content.sh`, which wraps `apm pack`). The first three are bare `apm …` hook entries, so without it the push dies with an unhelpful "command not found". Use `kyberforge:apm-install`, or `curl -sSL https://aka.ms/apm-unix | sh`; verify with `apm --version`.
 - Install `jq` — required by `scripts/check-manifests.sh` and `scripts/sync-plugin-content.sh`, both pre-push. These at least fail loudly (`Error: jq is required but not installed`).
 - Install the `vale` binary — required by the `vale-audit-prefilter-skill`/`-agent` pre-commit hooks. Their `files:` patterns are `.apm/`-scoped: `^plugins/[^/]+/\.apm/skills/[^/]+/SKILL\.md$` and `^plugins/[^/]+/\.apm/agents/[^/]+\.agent\.md$`. Only the authoring source triggers them — a `SKILL.md` in the generated mirror matches neither pattern, so prose findings surface only when you edit the file you are supposed to be editing. Without the binary the hooks fail with a bare "command not found" and no install pointer. `brew install vale` (macOS), `snap install vale` (Linux), `choco install vale` (Windows), or see https://vale.sh/docs/vale-cli/installation/. No `vale sync` needed — the `Kyberforge` styles are committed under `plugins/kyberforge/.apm/skills/{skill-audit,agent-audit}/assets/vale/styles/`, not downloaded packages (see ADR-0014).
+- `vale` is also a **pre-push** dependency, not only pre-commit. `check-vale-style-sync` runs six glob-coverage probes by invoking `vale --config` — they are the only assertions in it that catch a `.vale.ini` glob typo, the failure mode where every text-level check stays clean while vale lints zero files. Missing `vale` is therefore a hard failure there. The opt-out is `CHECK_VALE_STYLE_SYNC_ALLOW_MISSING_VALE=1`, and it is **not** `SKIP=`: the hook still runs and still asserts everything verifiable from file text, but the six probes do not, and its summary says so explicitly — `Vale style sync check passed (text-level only, vale unavailable): … 0 glob probe(s) verified`. Use it only on a machine that genuinely cannot install `vale`, and read that summary line as "the glob axis was not checked", not as a pass.
 - Run `bash tests/run-tests.sh` before considering any change done — it runs every `test-*.sh` script in the repo plus the bats suite (`--bats-only` for just bats). First run auto-initializes the bats submodules; no manual `git submodule update` needed.
 - Pushing runs 12 repo-defined pre-push hooks, not just the test suite — `run-tests` and `check-manifests`, plus generated-content drift gates (`check-plugin-content-sync`, `check-marketplace-mirror-sync`, `check-vale-style-sync`, `check-scope-walkup-sync`), apm's own gates (`apm-marketplace-check`, `apm-audit-ci`, `apm-pack-check-clean`), host validators (`validate-plugins`, `validate-marketplace`, both needing the `claude` CLI), and `check-release-needed`. Run `pre-commit run --hook-stage pre-push --all-files` locally — one command, the whole gate. That command reports **14**, not 12: pre-commit's own `meta` hooks, `check-hooks-apply` and `check-useless-excludes`, declare no `stages:` and so run at every stage including this one.
-- `apm-marketplace-check` needs the network. It resolves every `marketplace.packages[]` entry including the remote `mattpocock-skills` ref, and it is `always_run`, so an unreachable network hard-fails the push. `--offline` is not an escape hatch — it still exits 1 on that entry (`No cached refs (offline)`). To push without a network, skip that one hook using pre-commit's own mechanism: `SKIP=apm-marketplace-check git push`. Skip that hook alone — it is the only one whose failure mode is "no network". Every other pre-push hook is a real local check, and adding it to `SKIP` disarms it silently.
+- **Two** pre-push hooks need the network, for one shared reason: root `apm.yml`'s `marketplace.packages[]` contains exactly one remote entry (`mattpocock-skills`, `source: mattpocock/skills`), and resolving it needs a `git ls-remote`. `apm-marketplace-check` resolves every entry and is `always_run`, so it fails with `No cached refs (offline)`. `apm-pack-check-clean` (`apm pack --check-versions --check-clean --dry-run`) re-resolves the same entry and fails with `Error: Git network timeout during ls-remote`. Pinning the entry to an exact version does **not** remove the call — an exact pin still ls-remotes. `--offline` rescues neither. To push without a network, skip both using pre-commit's own mechanism: `SKIP=apm-marketplace-check,apm-pack-check-clean git push`. Skip those two alone — verified under `unshare -rn`, the other ten pre-push hooks pass offline because they are real local checks, and adding one of them to `SKIP` disarms it silently.
 - Author commits with `git:git-commits` — it validates Conventional Commits (enforced at `commit-msg`) for you.
 
 ## Key documents