docs: correct the claims this review found false

AGENTS.md told an offline agent to push with SKIP=apm-marketplace-check and
asserted that hook was "the only one whose failure mode is 'no network'".
Running all 12 pre-push hooks under a network namespace shows two fail, for
one shared cause: apm-pack-check-clean resolves the same remote entry. An
exact pin does not remove the ls-remote, so both hooks are named now.

AGENTS.md also said everything in a plugin root except .apm/ is generated.
Plugin roots carry hand-authored README.md, docs/, bin/, sources.md and
.mcp.json, so an agent would hunt for an .apm/ source that does not exist or
refuse the edit. The rule is positional: immunity belongs to the plugin root,
and anything inside a mirrored directory is still rm -rf'd.

ADR-0017 said apm strips a hooks field. The real loop is (agents, skills,
commands, instructions) -- hooks absent, instructions never mentioned -- and
it can never fire, because synthesize_plugin_json_from_apm_yml only emits the
eight identity fields. The decision stands; the mechanism was overstated. Its
mcpServers amendment is rewritten for the pointer payload and now records the
real reason: inlining bypassed apm's credential sanitizer.

ADR-0015's owner.email and version-pin passages are corrected against the apm
source, and ADR-0016 gains the disallowedTools amendment. agent-audit's
allowlist is data, so it gains disallowedTools too -- the ADR and the
validator that enforces it had come apart.

architecture.md described a root CLAUDE.md that imports two files (it imports
one, plus an RTK block) and pointed at an ADR index that does not exist.
Seven skill READMEs listed tests/ files the mirror strips, promising installed
users files their install lacks; those rows are marked source-only, with the
depth-4 template tests explicitly called out as surviving. And
plugins/kyberforge/hooks/README.md, deleted during the conversion and
preserved nowhere, is restored to a path the mirror does not own -- verified
by running a sync against a scratch copy.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01X7GvKuJfy2WrdBmUttV4DT

docs/spec/architecture.md

@@ -32,7 +32,9 @@ Two compilers produce the plugin roots you see in the tree:
 - **`apm pack` compiles the manifests** (ADR-0015). Per plugin: `.claude-plugin/plugin.json` and `.github/plugin/plugin.json`, both generated from `plugins/<name>/apm.yml`. Repo-wide, from the root `apm.yml`'s `marketplace:` block: `.claude-plugin/marketplace.json` (apm's `claude` output profile) and `.agents/plugins/marketplace.json` (its `codex` profile, a differently-shaped file). Those two are the only marketplace outputs apm has profiles for — the third root manifest, `.github/plugin/marketplace.json` (Copilot CLI's legacy path), is a byte-identical mirror of the Claude one maintained by `scripts/sync-marketplace-mirror.sh` and gated by the `check-marketplace-mirror-sync` pre-push hook.
 - **`scripts/sync-plugin-content.sh` compiles the content mirror** (ADR-0017). It wraps `apm pack --format plugin` and copies the resulting bundle's flat `agents/`, `skills/`, `commands/`, `instructions/`, `extensions/`, and merged `hooks/hooks.json` back to the plugin root. Claude Code's installer convention-scans those flat paths and has no `.apm/` awareness whatsoever, so the mirror exists solely to satisfy the host's discovery contract.
 
-`.apm/` is the sole hand-edited authoring source for plugin content. An edit made in the flat mirror is discarded by the next sync and is reported as drift by the `check-plugin-content-sync` pre-push hook. Hand-authored material that is not an `.apm/` primitive — `README.md`, `docs/`, `bin/`, `sources.md`, and `.mcp.json` — lives at the plugin root and is untouched by either compiler.
+`.apm/` is the sole hand-edited authoring source for plugin content. An edit made in the flat mirror is discarded by the next sync and is reported as drift by the `check-plugin-content-sync` pre-push hook. Hand-authored material that is not an `.apm/` primitive — `README.md`, `docs/`, `bin/`, `sources.md`, `.mcp.json`, and per-plugin extras such as `plugins/git/config.example.json`, `plugins/gitea/references/` and `plugins/bin/evals/` — lives at the plugin **root** and is untouched by either compiler.
+
+That immunity is positional, not by filename. Anything placed *inside* a mirrored directory is destroyed regardless of what it is: `sync_dir` runs `rm -rf "$dst"` before every copy, and `sync_hooks_json` does the same to `hooks/`. A hand-written `README.md` under `plugins/<name>/hooks/` or `plugins/<name>/skills/` is deleted by the next sync with no drift report, because a file with no `.apm/` counterpart is simply absent from the regenerated tree. This has already cost the repo one document — `plugins/kyberforge/hooks/README.md`, since restored to `plugins/kyberforge/docs/hooks.md`. Plugin-root documentation belongs in `docs/`.
 
 ## Governance layer
 
@@ -51,7 +53,9 @@ This repo uses two `AGENTS.md` files as the provider-agnostic source of always-o
 
 Both `CLAUDE.md` files are thin adapters: they import from their respective `AGENTS.md` and add only Claude Code-specific syntax (`@import`, content index paths). They carry no original always-on content.
 
-This repo also has a `CLAUDE.md` at its root — the Claude Code entry point for working in this repo. It imports `AGENTS.md` and `CONTEXT.md`, nothing more. This is distinct from `providers/claude-code/CLAUDE.md`, which is the global config deployed to `~/.claude/`.
+This repo also has a `CLAUDE.md` at its root — the Claude Code entry point for working in this repo. It imports `AGENTS.md` and nothing else; there is no `@CONTEXT.md` import. It is not import-only either: below the import sits a fenced `<!-- rtk-instructions v2 -->` … `<!-- /rtk-instructions -->` block carrying the RTK command-prefix convention, which is tool-specific content with no `AGENTS.md` source. This is distinct from `providers/claude-code/CLAUDE.md`, which is the global config deployed to `~/.claude/`.
+
+`CONTEXT.md` is therefore **not** always-loaded. `AGENTS.md` instructs agents to read it at session start, which is a behavioural instruction, not an `@import` guarantee — `LESSONS.md`'s 2026-05-17 entry proposed adding the import and it was never applied. Treat that entry as open work rather than a record of a landed change.
 
 ## Provider model
 
@@ -59,4 +63,4 @@ This repo also has a `CLAUDE.md` at its root — the Claude Code entry point for
 
 ## Architectural decisions
 
-Key hard-to-reverse decisions are recorded as ADRs in `docs/adr/`. See the index there for rationale on choices like the pull distribution model, copy-not-symlink coupling, and the two-tier CLAUDE.md structure.
+Key hard-to-reverse decisions are recorded as ADRs in `docs/adr/`. There is no index file — the directory holds 17 numbered ADRs whose filenames state their decision, so `ls docs/adr/` is the index. Read a superseding ADR before the one it supersedes: ADR-0015 (apm as the authoring source of truth) supersedes ADR-0001 and moots ADR-0006, and ADR-0017 corrects ADR-0015's host-discovery gap. Entry points for the structure described on this page: ADR-0002 (two-tier CLAUDE.md), ADR-0003 (AGENTS.md as the provider-agnostic entry point), ADR-0015 and ADR-0017 (the two compilers behind the plugin roots).