fix: remove the obsidian MCP server and the unreadable .mcp.json files

718c79a deleted every per-plugin .claude-plugin/plugin.json, which
reclassified each package from a marketplace plugin to a plain apm
package. That silently broke MCP propagation: apm_cli/deps/plugin_parser.py
maps a plugin-root .mcp.json into .apm/.mcp.json, and that code path runs
only for marketplace plugins. With no manifest, apm never reads the file.

Reproduced on ref-pinned consumer clones: at the parent commit a consumer
receives the obsidian server, at HEAD it receives none, and on upgrade apm
prints "Removed stale MCP server 'obsidian' from .mcp.json". This repo
consumes its own plugins through apm (ADR-0018), so the tracked root
.mcp.json would have been rewritten to an empty server map on the next
lock re-resolve -- silent tool loss plus unexplained working-tree drift.

The server is removed entirely rather than relocated to .apm/. It was
already a standing question (SIMPLIFICATION-AUDIT finding 37, deferred on
2026-09-13 pending confirmation, now confirmed), and plugins/bin/apm.yml
declares dependencies.mcp: [] -- apm's supported mechanism was never used.
All seven .mcp.json files go; the root one is apm-generated output and is
now gitignored alongside the other install artifacts.

ADR-0011's deferred ".mcp.json wiring gap" is moot twice over -- the
install route it blocked no longer exists and neither does the file --
and ADR-0018 records why it lost its only worked example of MCP
propagation. apm.lock.yaml still carries the server; it clears on the
first apm update after this reaches the default branch.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01YR2CjVumUbEGWcMikcoXBD

docs/adr/0011-gitea-skill-deep-modules.md

@@ -67,6 +67,14 @@ than being wired into the plugin manifest. This means the gitea plugin is not ye
 standalone via `claude plugin install gitea@holocron` without manual MCP setup. A follow-up Gitea
 issue tracks closing this gap.
 
+**Correction (2026-09-14):** this gap is now closed by removal rather than by wiring. ADR-0024
+made apm the only supported install path, so `claude plugin install gitea@holocron` is no longer
+a route this repo supports, and the per-plugin manifests it needed are gone. Because apm reads a
+plugin-root `.mcp.json` only on the marketplace-plugin code path, that file became unreadable;
+every `plugins/*/.mcp.json` was deleted, including this one. A plugin that needs an MCP server
+declares it in `dependencies.mcp` in its `apm.yml` — the supported mechanism, which this repo has
+never used. The follow-up issue this paragraph anticipates is moot.
+
 **Research backfill.** The existing research docs
 (`plugins/gitea/docs/research/docs/gitea/`) are 100% code-derived from gitea-mcp source with zero
 external/best-practice content (the original docs.gitea.com fetch timed out and was never