chore: move skills and evals to plugins/bin, remove legacy root configs

Skills and evals migrated from .agents/ to plugins/bin/ plugin directory.
Remove .mcp.json, provider-manifest.sh, and skills-lock.json legacy artifacts.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

plugins/bin/skills/tdd/deep-modules.md

@@ -0,0 +1,33 @@
+# Deep Modules
+
+From "A Philosophy of Software Design":
+
+**Deep module** = small interface + lots of implementation
+
+```
+┌─────────────────────┐
+│   Small Interface   │  ← Few methods, simple params
+├─────────────────────┤
+│                     │
+│                     │
+│  Deep Implementation│  ← Complex logic hidden
+│                     │
+│                     │
+└─────────────────────┘
+```
+
+**Shallow module** = large interface + little implementation (avoid)
+
+```
+┌─────────────────────────────────┐
+│       Large Interface           │  ← Many methods, complex params
+├─────────────────────────────────┤
+│  Thin Implementation            │  ← Just passes through
+└─────────────────────────────────┘
+```
+
+When designing interfaces, ask:
+
+- Can I reduce the number of methods?
+- Can I simplify the parameters?
+- Can I hide more complexity inside?