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docs: factory integration grill — decision record, ADRs, and chunk scope update

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- Decision record covering 12 decisions from the factory integration grill
- ADR-0008 (factory boundary: this repo is a provider, not a factory instance)
- ADR-0009 (flat skill taxonomy with category metadata in frontmatter)
- ADR-0010 (role skills in .agents/skills/; core/agents/ for subagent definitions)
- Issue 0013 (LESSONS.md at repo root)
- Issue 0014 (docs/spec/ living spec layer + VISION.md refactor)
- ROADMAP Chunk 3 scope expanded: skills rebuild, new skills (session-handoff,
  governance-check, git-guardrails, write-adr), IaC/Gitea global optional
- Per-skill process: implementation guidance Sections 4-5 and skills index
  referenced as starting point before web research and grilling
- factory-research-gaps-conflicts.md marked superseded

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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# Flat skill directories with category metadata, not nested paths
Skills are stored as flat directories directly under `.agents/skills/` (`grill-me/SKILL.md`, not `design/grill-me/SKILL.md`). Category organisation is expressed via `metadata: category:` in each SKILL.md frontmatter rather than directory nesting.
Nested paths were evaluated and rejected for three reasons. First, Claude Code discovers skills exactly one level deep under `~/.claude/skills/` — a skill at `~/.claude/skills/design/grill-me/SKILL.md` is invisible to the tool. Second, the agentskills.io open standard specifies that the `name` field must match the parent directory name, implying a flat structure at the skills root; no nested discovery is defined in the spec. Third, `install.sh` iterates `for skill_dir in .agents/skills/*/` — one level only; nested paths would require a traversal rewrite before a single nested skill could be deployed.
Category metadata achieves the same organisational goals: the Management App can group skills by category, a generated README can cluster them, and the category is machine-readable for tooling — all without path changes, pipeline changes, or deviation from the open standard. If Claude Code adds nested discovery in a future release, paths can be restructured then with evidence rather than speculatively now.