holocron/scripts/sync-plugin-content.sh

#!/usr/bin/env bash
set -euo pipefail

# Mirrors each plugin's .apm/{agents,skills,prompts,commands,instructions,extensions,hooks}
# into flat plugin-root directories (agents/, skills/, commands/, instructions/,
# extensions/, hooks/hooks.json) -- Claude Code's and GitHub Copilot's plugin loaders
# convention-scan those flat paths at the plugin root; neither has any awareness of
# apm's .apm/ nesting (confirmed via `strings` on the installed claude binary and a
# live `claude --plugin-dir <bundle> -p ...` discoverability test -- see issue #90).
# `apm pack --format plugin` already implements the correct .apm/ -> plugin-convention
# mapping (it's built for distributable bundles under build/, a directory nothing in
# marketplace.json points at); this script reuses that mapping and copies the relevant
# subset back into the plugin root as compiled output -- same status as
# .claude-plugin/plugin.json, never hand-edited when .apm/ is present.
#
# plugin.json, apm.lock.yaml, and .mcp.json from the bundle are deliberately NOT
# copied: .claude-plugin/plugin.json + .github/plugin/plugin.json are already
# generated in-place at the plugin root by a separate apm code path
# (core/plugin_manifest.py, run as part of the same `apm pack` invocation, keyed off
# cwd rather than -o), and .mcp.json is hand-authored at the plugin root per ADR-0015
# (it is not an .apm/ primitive). Both real and check-mode syncs pass --force so that
# path actually refreshes both files from current apm.yml/.apm/ content -- apm pack
# silently skips regenerating an existing plugin.json otherwise ("already exists;
# skipping plugin.json generation"), which would let them go stale after a
# name/version/description edit (real mode) or let --check compare a copy against
# itself and never see the drift (check mode; see sync_plugin_manifest below).
#
# apm's Copilot-ecosystem plugin.json builder omits mcpServers entirely -- its own
# docstring calls it out-of-schema for Copilot, but this repo's researched Copilot
# plugin schema docs (plugins/kyberforge/docs/research/docs/github-copilot-plugins/
# configuration.md) document mcpServers as valid there. Both modes re-inject it into
# .github/plugin/plugin.json from the plugin's own .mcp.json after apm pack runs (see
# reinject_mcp_servers below) -- real mode into the plugin root directly, check mode
# into the throwaway copy first so the manifest diff below sees the same content a
# real sync would actually produce.
#
# apm pack also writes .claude-plugin/plugin.json and .github/plugin/plugin.json into
# cwd whenever those files don't already exist yet -- regardless of --force -- so
# --check (which must never mutate the real plugin root) never cds into plugin_dir
# directly. It packs a throwaway copy instead (see sync_one's pack_cwd), forces
# regeneration of both manifest files inside that copy, then diffs them
# (sync_plugin_manifest) against the real plugin root's committed manifests to catch
# drift in name/version/description/mcpServers -- only the copy's manifest files,
# never the real ones, can get created as a first-write.
#
# The merged hooks file is mirrored like the other MIRROR_DIRS content: synced when
# .apm/hooks/ produces one, and removed (real mode) / flagged as drift (--check) when
# it no longer does but a mirrored copy is still sitting there from a prior sync.
# The hooks/ directory holding it is owned outright by the mirror the same way every
# MIRROR_DIRS destination is -- a real sync wipes and rebuilds it, so a stray file
# dropped inside, or the empty directory left behind once .apm/hooks/ stops producing
# a hooks.json, is cleaned up rather than preserved. (A stray at the PLUGIN ROOT is a
# different matter and stays out of scope by design: README.md, docs/, bin/, .mcp.json
# and friends are hand-authored there.)
# It lands at hooks/hooks.json, not at the plugin root: Claude Code convention-scans
# `hooks/hooks.json` "at the plugin root, not inside .claude-plugin/"
# (plugins/kyberforge/docs/research/docs/claude-code-plugins/configuration.md's "Plugin
# Directory Layout" table; quoted verbatim in ADR-0017's own root-cause analysis), and
# the compiled plugin.json carries no `hooks` pointer to override that. apm emits none:
# `hooks` is not in build_plugin_manifest's strip list at all (that list is
# agents/skills/commands/instructions, and it is dead code besides -- see ADR-0017's
# "Considered options"); apm.yml simply has no key that produces one. A root-level
# hooks.json (this script's own pre-fix output shape) is therefore scanned by nothing at
# all, and is deleted as stale by a real sync / reported as drift by --check.
#
# NO `hooks` POINTER IS RE-INJECTED into .github/plugin/plugin.json, deliberately, and
# this is NOT the same call as mcpServers above. Copilot types `hooks` "string or object"
# with no default, exactly like mcpServers, so Copilot resolves no hooks from any plugin
# here -- but the two ecosystems' hooks FILE FORMATS are mutually incompatible (Claude:
# `{"hooks": {"PreToolUse": [{matcher, hooks:[...]}]}}`; Copilot: `{"version": 1,
# "hooks": {"sessionStart": [{type, bash, powershell, ...}]}}`), and apm's exporter
# merges .apm/hooks/*.json into exactly ONE hooks.json with no per-target shaping
# (_collect_hooks_from_apm, apm_cli/bundle/plugin_exporter.py). A pointer would therefore
# assert that a Claude-shaped file is Copilot-shaped. .mcp.json carries no such claim --
# it is one host-agnostic format both ecosystems read. See ADR-0017's 2026-08-14
# "no `hooks` pointer" amendment; plugins/kyberforge/docs/hooks.md carries the
# author-facing version.
#
# SYMLINKS UNDER .apm/ ARE NOT MIRRORED and cannot be: apm's bundle exporter filters
# every symlink out of the bundle it produces (`f.is_file() and not f.is_symlink()` in
# _collect_flat/_collect_recursive, and the same test in _collect_hooks_from_apm), with
# no warning. Nothing downstream of the bundle can see the omission -- both sides of
# --check's diff are built from that same bundle, so sync and --check agree the symlink
# never existed. check_apm_symlinks below therefore reads the .apm/ SOURCE tree directly,
# which is the only place the loss is visible, and reports it in both modes.
#
# tests/ subdirectories (e.g. .apm/skills/<name>/tests/*.bats) are excluded from the
# mirror -- they are dev-time fixtures a plugin host never needs to discover, and several
# reference their own repo root via a hardcoded relative walk-up (e.g.
# `../../../../../../`) sized for the .apm/-nested depth. Mirroring them verbatim would
# duplicate each file one directory level shallower than that walk-up expects, breaking
# the duplicate and double-running the original under any repo-wide bats/test discovery.
# The exclusion is depth-scoped to <category>/<name>/tests, because a skill may legitimately
# ship a directory literally named tests as a template asset it scaffolds FROM
# (skills/skill-author/assets/templates/tests) -- stripping that breaks the shipped
# scaffolder, which sed's its way through the template tree file by file.
#
# --check does NOT reimplement any of the above. It runs the real sync functions against
# a throwaway copy of the plugin root and diffs the result against the live mirror with
# no exclusions, so the tests/ scoping and the hooks path exist in exactly one place and
# check mode is structurally incapable of disagreeing with what a real sync produces.

usage() {
  echo "Usage: $0 [--check] (--all | <plugin-dir> [<plugin-dir> ...])" >&2
  exit 1
}

CHECK=0
if [[ "${1:-}" == "--check" ]]; then
  CHECK=1
  shift
fi

ALL=0
if [[ "${1:-}" == "--all" ]]; then
  ALL=1
  shift
fi

if [[ "$ALL" -eq 1 ]]; then
  [[ $# -eq 0 ]] || usage
else
  [[ $# -ge 1 ]] || usage
fi

if ! command -v apm &>/dev/null; then
  echo "Error: apm is required but not installed (see kyberforge:apm-install)" >&2
  exit 1
fi

if ! command -v jq &>/dev/null; then
  echo "Error: jq is required but not installed" >&2
  exit 1
fi

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
# Both source= paths below are repo-root-relative, not script-dir-relative -- see
# tests/run-tests.sh for why the script-dir spelling silently fails to resolve.
# shellcheck source=scripts/lib/marketplace-plugins.sh
source "$SCRIPT_DIR/lib/marketplace-plugins.sh"
# shellcheck source=scripts/lib/batch-run.sh
source "$SCRIPT_DIR/lib/batch-run.sh"

# Convention subdirectories apm's plugin exporter can populate from .apm/.
#
# These are DESTINATION directory names at the plugin root, not .apm/ source
# directory names -- the two lists are deliberately not the same, so do not "fix"
# this by pasting in the header comment's .apm/ list. In particular .apm/prompts/
# has no destination of its own: apm's exporter folds it into commands/ together
# with .apm/commands/, renaming *.prompt.md to *.md (ADR-0017's mapping table;
# re-verified empirically against apm 0.28.0, and pinned by the prompts test in
# tests/test-sync-plugin-content.sh). Adding `prompts` here would name an output
# directory apm never emits and no plugin host ever scans.
MIRROR_DIRS=(agents skills commands instructions extensions)

# The .apm/ SOURCE directories apm's exporter reads to build the bundle -- the input
# side of MIRROR_DIRS, and deliberately a different list: `prompts` is here because
# apm reads it (folding it into commands/), and `hooks` is here because
# _collect_hooks_from_apm reads it. Used only by check_apm_symlinks, which needs to
# know which parts of .apm/ are mirror INPUT: a symlink under a directory apm never
# reads loses nothing and must not be reported as loss.
APM_SOURCE_DIRS=(agents skills prompts commands instructions extensions hooks)

# The generated hooks directory, the merged hooks file inside it (Claude Code's
# convention-scanned path), and the pre-fix root-level path a real sync now cleans
# up as stale.
HOOKS_DIR_REL="hooks"
HOOKS_REL="$HOOKS_DIR_REL/hooks.json"
LEGACY_HOOKS_REL="hooks.json"

FAIL=0
SCRATCH_ROOT="$(mktemp -d)"
trap 'rm -rf "$SCRATCH_ROOT"' EXIT

# The manifest comparison in check_path_modes needs octal permission bits, and
# GNU coreutils and BSD/macOS stat disagree on both the flag and the format
# specifier. Probe once at startup against a path known to exist rather than
# branching on `uname` (which says nothing about which coreutils is installed --
# GNU stat is perfectly common on macOS via Homebrew).
declare -a STAT_MODE_ARGS=()
if [[ "$(stat -c '%a' "$SCRIPT_DIR" 2>/dev/null)" =~ ^[0-7]+$ ]]; then
  STAT_MODE_ARGS=(-c '%a')
elif [[ "$(stat -f '%Lp' "$SCRIPT_DIR" 2>/dev/null)" =~ ^[0-7]+$ ]]; then
  STAT_MODE_ARGS=(-f '%Lp')
else
  # Hard error rather than degrading to a no-mode manifest: silently checking
  # less than advertised is the exact failure mode this gate exists to prevent.
  echo "Error: cannot read octal file modes -- neither \`stat -c '%a'\` (GNU coreutils) nor \`stat -f '%Lp'\` (BSD/macOS) works here" >&2
  exit 1
fi

if [[ "$ALL" -eq 1 ]]; then
  # Derives the plugin list from marketplace.json via the shared
  # list_marketplace_local_plugins helper (scripts/lib/marketplace-plugins.sh),
  # the same one scripts/check-manifests.sh uses, instead of hand-maintaining a
  # duplicate walk at every call site (see .pre-commit-config.yaml's
  # check-plugin-content-sync).
  #
  # Hard error rather than a `|| pwd` fallback, on scripts/sync-marketplace-mirror.sh's
  # reasoning: --all's entire work list hangs off REPO_ROOT, so a REPO_ROOT pointing at
  # something that is not this repo checks a plugin set that is not this repo's. Run
  # from outside a worktree the fallback happens to hit the `--all requires ...` error
  # below instead -- but only by accident, because $PWD had no marketplace.json in it;
  # $PWD holding an unrelated one is the case that would silently "pass".
  if ! REPO_ROOT="$(git rev-parse --show-toplevel 2>/dev/null)" || [[ -z "$REPO_ROOT" ]]; then
    echo "Error: not inside a git worktree -- cannot locate the repository root, and guessing \$PWD would let --all derive its plugin list from a marketplace.json that is not this repo's. Run this from within the repository." >&2
    exit 1
  fi
  MARKETPLACE="$REPO_ROOT/.claude-plugin/marketplace.json"
  if [[ ! -f "$MARKETPLACE" ]]; then
    echo "Error: --all requires $MARKETPLACE" >&2
    exit 1
  fi
  # Called from this shell, NOT from inside the `< <(...)` below -- that process
  # substitution is its own subshell, so a `set -e` abort or a jq parse failure in
  # there kills only the subshell and the `while read` loop simply gets no input.
  # An unparseable marketplace.json then reads exactly like "declares no plugins",
  # plugin_dirs comes back empty, batch_run dispatches nothing, and --check --all
  # exits 0 having verified nothing at all (see the floor below).
  assert_marketplace_manifest_usable "$MARKETPLACE"
  declare -a plugin_dirs=()
  while IFS=$'\t' read -r _name plugin_dir; do
    plugin_dirs+=("$plugin_dir")
  done < <(list_marketplace_local_plugins "$REPO_ROOT" "$MARKETPLACE")
  # Floor: --all is a gate whose work list comes from a GENERATED file, so an
  # empty derived set is drift, not a pass -- regenerating marketplace.json badly
  # would otherwise silence the very hook that guards it. assert_... above rejects
  # the malformed shapes; this rejects the well-formed-but-empty one.
  if [[ ${#plugin_dirs[@]} -eq 0 ]]; then
    echo "Error: $MARKETPLACE declares no local (string-source) plugin entries -- --all would check nothing and report success. Expected at least one; recompile it with \`apm pack\` if it is stale." >&2
    exit 1
  fi
else
  declare -a plugin_dirs=("$@")
fi

# Fail fast on a basename collision rather than letting two plugin_dir arguments
# silently share (and corrupt) the same $name.log/$name.status/$name.checkcopy
# scratch paths below.
#
# The same loop rejects `.` and `..`, because every scratch path here is built by
# pasting this basename onto $SCRATCH_ROOT. `basename ..` is `..`, so
# "$SCRATCH_ROOT/$name" resolves to $SCRATCH_ROOT's PARENT -- apm pack then writes
# its bundle into a directory this script neither owns nor cleans up (the EXIT
# trap only removes $SCRATCH_ROOT itself), and sync_one's
# `find "$scratch" -mindepth 1 -maxdepth 1 -type d | head -1` picks whatever
# unrelated directory readdir happens to hand back first as the "bundle" -- whose
# agents/ and skills/ a real sync then cp -a's into the plugin root, after an
# rm -rf. The collision check below cannot catch this: a single `..` argument
# collides with nothing.
declare -a seen_names=()
for plugin_dir in ${plugin_dirs[@]+"${plugin_dirs[@]}"}; do
  name="$(basename "${plugin_dir%/}")"
  if [[ "$name" == "." || "$name" == ".." ]]; then
    echo "Error: plugin dir '$plugin_dir' has basename '$name' -- scratch paths built from it would escape the scratch root. Pass the plugin directory by name, not by a relative traversal." >&2
    exit 1
  fi
  for seen in ${seen_names[@]+"${seen_names[@]}"}; do
    if [[ "$seen" == "$name" ]]; then
      echo "Error: duplicate plugin basename '$name' among arguments -- scratch paths would collide" >&2
      exit 1
    fi
  done
  seen_names+=("$name")
done

normalize_trailing_newline() {
  # apm's bundle exporter writes hooks.json without a trailing newline, which
  # end-of-file-fixer (pre-commit) would flag on every regeneration -- normalize
  # instead of fighting that hook on every sync.
  printf '%s\n' "$(cat "$1")" >"$2"
}

# Reports every symlink under the .apm/ directories apm's exporter reads. Runs in
# BOTH modes, and is the one check here that reads the .apm/ source tree rather than
# comparing two bundle-derived trees.
#
# It has to: apm drops symlinks from the bundle silently (see the header), so by the
# time either mode has a bundle the symlink is already gone from both sides of every
# comparison. check_dir, check_file and check_path_modes all diff the live mirror
# against a freshly synced copy -- neither side has the file, they agree, and --check
# exits 0 while the author's content is simply not there. That is the entire failure
# mode: not a mismatch, an absence with nothing left to mismatch against. Verified on
# a fixture -- `ln -s real.md link.md` under .apm/skills/hello/ produced a mirror with
# no link.md and a --check at exit 0.
#
# Reported rather than resolved (no dereference-and-copy): the mirror's contract is
# that it is `apm pack`'s output, and materializing a file apm chose not to export
# would make a real sync produce content the bundle does not contain -- exactly the
# "reimplement the mapping outside apm" that ADR-0017 rejects. Telling the author is
# the cheap, in-contract half.
#
# <name>/tests is carved out to match sync_dir's own depth-scoped exclusion: that
# subtree is not mirrored whether or not it holds a symlink, so nothing is lost there.
# The carve-out is on the SECOND path segment specifically, mirroring sync_dir's
# `-mindepth 2 -maxdepth 2`; a `tests` deeper than that (assets/templates/tests) IS
# mirrored, so a symlink in it is real loss and is reported.
check_apm_symlinks() {
  local apm_dir="$1"
  local d src link rel rest

  for d in "${APM_SOURCE_DIRS[@]}"; do
    src="$apm_dir/$d"
    [[ -d "$src" ]] || continue
    while IFS= read -r link; do
      rel="${link#"$src"/}"
      rest="${rel#*/}"
      if [[ "$rest" != "$rel" ]] && { [[ "$rest" == "tests" ]] || [[ "$rest" == tests/* ]]; }; then
        continue
      fi
      echo "FAIL $link: symlink under .apm/ -- apm's bundle exporter drops symlinks from the bundle entirely, so this content never reaches the mirror and no diff can see it missing. Replace it with a regular file." >&2
      FAIL=1
    done < <(find "$src" -type l -print 2>/dev/null | LC_ALL=C sort)
  done
}

# Real-mode mirror write. There is no --check branch here on purpose: check mode
# calls this same function against a throwaway copy of the plugin root and diffs
# the result (see sync_one), so the tests/ exclusion below is the only copy of
# that rule anywhere in this script.
sync_dir() {
  local target_dir="$1" bundle_dir="$2" d="$3"
  # ${target_dir:?} for the same reason sync_hooks_json spells it out: `set -u`
  # aborts on an UNSET variable but not an empty one, and an empty $target_dir
  # would make the rm -rf calls below `rm -rf /agents`, `/skills`, `/commands`,
  # `/instructions`, `/extensions`. Unreachable from today's two call sites
  # (both pass either a `[[ -d ]]`-validated plugin_dir or a scratch path), but
  # the guard costs nothing and the next caller added here gets it for free.
  local src="$bundle_dir/$d" dst="${target_dir:?}/$d"

  if [[ -d "$src" ]]; then
    rm -rf "$dst"
    mkdir -p "$dst"
    cp -a "$src/." "$dst/"
    # Depth-scoped to <category>/<name>/tests (depth 2 relative to $dst), which is
    # where every dev-time fixture lives. A depth-agnostic `-name tests` also matched
    # template assets a skill ships for its own scaffolder to copy FROM -- e.g.
    # skills/skill-author/assets/templates/tests at depth 4, whose removal made the
    # mirrored new-skill.sh die on `sed: can't read .../tests/README.md` midway
    # through writing a scaffold.
    find "$dst" -mindepth 2 -maxdepth 2 -type d -name tests -exec rm -rf {} +
  elif [[ -d "$dst" ]]; then
    rm -rf "$dst"
  fi
}

# Real-mode merged-hooks write; same single-implementation contract as sync_dir.
sync_hooks_json() {
  local target_dir="$1" bundle_dir="$2"
  local src="$bundle_dir/hooks.json"
  local dst="$target_dir/$HOOKS_REL" legacy="$target_dir/$LEGACY_HOOKS_REL"

  # Earlier revisions of this script wrote the merged hooks file to the plugin
  # root. Nothing scans it there (see the header comment), so it is stale output
  # regardless of whether .apm/hooks/ still produces one -- clean it up first.
  if [[ -f "$legacy" ]]; then
    rm -f "$legacy"
  fi

  # hooks/ is generated output the mirror owns outright, exactly like every
  # MIRROR_DIRS destination -- so wipe it wholesale and rebuild, rather than
  # editing hooks.json in place and leaving whatever else happens to be in there.
  # sync_dir gets this for free from its own rm -rf; hooks/ has to spell it out
  # because its one legitimate occupant is written by name instead of copied as a
  # tree. The wipe covers both a stray file someone dropped alongside hooks.json
  # and the case where .apm/hooks/ stops producing a hooks.json at all: the
  # directory then ends up absent, not present-and-empty.
  #
  # ${target_dir:?} rather than a bare expansion: `set -u` aborts on an UNSET
  # variable but not an empty one, and an empty $target_dir would make this
  # `rm -rf /hooks`. sync_dir above builds its own $dst from the same
  # caller-supplied parameter and carries the identical guard for the identical
  # reason -- neither function is special here.
  rm -rf "${target_dir:?}/$HOOKS_DIR_REL"

  if [[ -f "$src" ]]; then
    mkdir -p "$target_dir/$HOOKS_DIR_REL"
    normalize_trailing_newline "$src" "$dst"
  fi
}

# --- check mode: compare the real plugin root against a synced throwaway copy ---
#
# Every function below is pure comparison. None of them knows what the mirror
# rules are; $expected_dir is the output of the real sync functions above.

check_dir() {
  local plugin_dir="$1" expected_dir="$2" d="$3"
  local expected="$expected_dir/$d" actual="$plugin_dir/$d"

  if [[ -d "$expected" ]]; then
    if [[ ! -d "$actual" ]]; then
      echo "DRIFT $actual: missing (would be created from .apm/)" >&2
      FAIL=1
    elif ! diff -rq "$expected" "$actual" >/dev/null 2>&1; then
      echo "DRIFT $actual: out of sync with .apm/" >&2
      # `|| true`: pipefail (set -o at the top) turns diff's exit 1 into a failed
      # pipeline, and set -e would abort sync_one right here -- reporting only the
      # first drifted directory per plugin and turning one push into N fix cycles.
      diff -rq "$expected" "$actual" 2>&1 | sed 's/^/    /' >&2 || true
      FAIL=1
    fi
  elif [[ -d "$actual" ]]; then
    echo "DRIFT $actual: stale, no longer produced from .apm/" >&2
    FAIL=1
  fi
}

check_file() {
  local plugin_dir="$1" expected_dir="$2" rel="$3" desc="$4"
  local expected="$expected_dir/$rel" actual="$plugin_dir/$rel"

  if [[ -f "$expected" ]]; then
    if [[ ! -f "$actual" ]]; then
      echo "DRIFT $actual: missing (would be created from $desc)" >&2
      FAIL=1
    elif ! diff -q "$expected" "$actual" >/dev/null 2>&1; then
      echo "DRIFT $actual: out of sync with $desc" >&2
      FAIL=1
    fi
  elif [[ -f "$actual" ]]; then
    echo "DRIFT $actual: stale, no longer produced from $desc" >&2
    FAIL=1
  fi
}

# Relative paths whose mode the manifest below deliberately does NOT record. See
# path_manifest's comment for the rule; this is the list of paths it applies to --
# every file this pipeline WRITES rather than `cp -a`s.
NO_MODE_PATHS=("$HOOKS_REL" "$LEGACY_HOOKS_REL")

# Prints "<kind> <octal-mode> <relative-path>" for every entry under the given
# relative paths. `find` walks; $STAT_MODE_ARGS (probed once at startup) reads the
# mode, because stat's flags for mode formatting are incompatible between GNU and
# BSD/macOS.
#
# THE RULE: a mode is recorded for a path this pipeline COPIES, and not for one it
# WRITES. The two sides of the comparison are a git checkout (actual) and a fresh
# apm-pack-plus-mirror (expected), so a copied path's mode traces to the same
# checkout on both sides and comparing it is meaningful; a written path's mode is
# `0666 & ~umask` of whichever process wrote it -- the runtime umask on the expected
# side, the umask of the checkout that produced the committed file on the actual
# side. Those two are independent, git records neither, and no sync can make them
# converge, so comparing them reports the runner's umask instead of a property of
# the mirror.
#
# Full permission bits on COPIED FILES, not just the exec bit: an earlier revision
# emitted a bare `exec`/`file` kind, so `chmod 444` on a mirrored SKILL.md left
# --check at exit 0 while a real sync restored 644 -- check and sync disagreeing
# again, in the same shape the exec-bit case already proved. Git tracks only the exec
# bit, so this cannot arrive via a clone, but the gate's contract is that it agrees
# with a real sync about everything a real sync writes.
#
# DIRECTORIES record no mode: nothing here sets one, they come from `mkdir -p` and
# `cp -a`, and git tracks no directory mode. Verified concretely -- extracting this
# repo with `git archive | tar -x` (which restores 0775/0664 when run as root) makes
# a --check against the extracted tree report drift on every mirrored directory,
# while the same check against the real 0755 tree is silent.
#
# $NO_MODE_PATHS record no mode for the identical reason, and this is where the
# "copied files are immune because both sides trace to the same checkout" premise
# stops holding. hooks/hooks.json is not copied: sync_hooks_json writes it with
# `printf '%s\n' >`, at the RUNTIME umask. Widening the file comparison from the exec
# bit to full permission bits therefore made the gate umask-dependent -- on a
# umask-002 machine, `--check --all` over a umask-022 checkout reported
# `< file 664 hooks/hooks.json` / `> file 644` for every plugin with hooks, and it
# was not fixable by committing: a real sync writes 664, `git status` stays empty
# because git tracks no non-exec mode, and the next --check from a umask-022 machine
# fails in the opposite direction.
#
# The two generated plugin.json manifests are not in this manifest AT ALL -- see
# sync_one's checked_paths for why listing them measured nothing.
path_manifest() {
  local root="$1"
  shift
  local rel f kind mode no_mode
  for rel in "$@"; do
    if [[ ! -e "$root/$rel" ]] && [[ ! -L "$root/$rel" ]]; then
      continue
    fi
    find "$root/$rel" -print 2>/dev/null | LC_ALL=C sort | while IFS= read -r f; do
      if [[ -L "$f" ]]; then
        # A symlink's own lstat mode is 0777 on Linux and 0755 on macOS and is
        # not something either side controls -- the type difference is the whole
        # signal here, so record no mode for it.
        kind="symlink"
        mode="-"
      elif [[ -d "$f" ]]; then
        kind="dir"
        mode="-"
      else
        kind="file"
        mode="$(stat "${STAT_MODE_ARGS[@]}" "$f")"
        for no_mode in "${NO_MODE_PATHS[@]}"; do
          if [[ "${f#"$root"/}" == "$no_mode" ]]; then
            mode="-"
            break
          fi
        done
      fi
      printf '%s %s %s\n' "$kind" "$mode" "${f#"$root"/}"
    done || true
  done
}

# `diff -r` compares content only: it dereferences symlinks and ignores file modes
# entirely. So `chmod -x` on a mirrored script, or swapping a mirrored file for a
# symlink to identical content, both leave --check at exit 0 while a real sync
# silently repairs them -- check and sync disagreeing, which is the one thing this
# gate exists to prevent. Compare an explicit type+permission manifest as well.
#
# The manifest is a full recursive listing, so it is also what makes an entry that
# exists on only one side visible. That is the sole coverage the generated hooks/
# directory gets for anything other than hooks.json itself (which check_file above
# handles by name): a stray file inside hooks/, or hooks/ still sitting there empty
# after .apm/hooks/ stopped producing anything, shows up here as a manifest line
# present on one side only. Both are things sync_hooks_json's rm -rf removes, so
# both have to be drift.
check_path_modes() {
  local plugin_dir="$1" expected_dir="$2"
  shift 2
  local expected actual
  expected="$(mktemp)"
  actual="$(mktemp)"
  path_manifest "$expected_dir" "$@" >"$expected"
  path_manifest "$plugin_dir" "$@" >"$actual"
  if ! diff -q "$expected" "$actual" >/dev/null 2>&1; then
    echo "DRIFT $plugin_dir: mirrored paths/types/modes differ from a fresh sync" >&2
    diff "$expected" "$actual" 2>&1 | sed 's/^/    /' >&2 || true
    FAIL=1
  fi
  rm -f "$expected" "$actual"
}

# Sets `mcpServers` on the generated Copilot manifest to the STRING ".mcp.json" --
# the path form of the field, not the resolved server objects. Copilot's schema
# types the field "string or object -- MCP server config path or inline
# definitions" (plugins/kyberforge/docs/research/docs/github-copilot-plugins/
# configuration.md), so both are valid there; only one of them is safe.
#
# An earlier revision inlined the objects with
# `jq --slurpfile mcp '.mcpServers = $mcp[0].mcpServers'`. That copies .mcp.json
# verbatim into a committed, marketplace-distributed file, bypassing apm's own
# _sanitize_mcp_servers() (apm_cli/core/plugin_manifest.py), which drops
# env/environment/headers/authorization and any key matching
# token/secret/password/credential/apikey/key at any depth before writing the
# Claude manifest. Proven with a fixture: an `env` block holding a token-shaped
# value produced a sanitized .claude-plugin/plugin.json and a
# .github/plugin/plugin.json carrying the live value. A path reference cannot
# carry a secret at all -- the manifest names a file and the host resolves it at
# load time -- and it preserves the ${VAR} indirection apm documents as the
# posture for MCP secrets, rather than stripping it. See ADR-0017's 2026-08-14
# amendment.
reinject_mcp_servers() {
  local plugin_dir="$1" target_dir="$2"
  local mcp_src="$plugin_dir/.mcp.json" dst="$target_dir/.github/plugin/plugin.json"
  [[ -f "$mcp_src" ]] || return 0
  [[ -f "$dst" ]] || return 0

  # Match apm's own Claude-ecosystem plugin.json builder: mcpServers is omitted
  # entirely when the plugin declares none, not written out as an empty object.
  # A plugin whose .mcp.json is `{"mcpServers": {}}` gets no key at all -- not a
  # ".mcp.json" pointer at an empty file.
  local count
  count="$(jq '(.mcpServers // {}) | length' "$mcp_src")"
  [[ "$count" -gt 0 ]] || return 0

  local tmp
  tmp="$(mktemp)"
  jq '.mcpServers = ".mcp.json"' "$dst" >"$tmp"
  # Write THROUGH the existing file rather than `mv`-ing the mktemp over it:
  # mktemp creates 0600, and mv carries that mode onto a tracked, published
  # manifest. Git records only the exec bit, so the demotion survived every
  # commit and review unnoticed -- plugins/bin/.github/plugin/plugin.json really
  # was 0600 on disk while its five siblings were 0644. Redirecting into $dst
  # keeps its inode, owner and mode, which is the whole fix: whatever mode apm
  # pack gave the manifest a moment ago is exactly the mode it still has.
  #
  # Deliberately NO `chmod 644` after it. A hardcoded mode here does not pin
  # anything a re-sync could converge on -- apm pack created $dst at the runtime
  # umask, and the committed file carries the umask of the checkout that produced
  # it -- it only makes those two disagree. It did: on a umask-002 checkout,
  # --check reported `< file 644 .github/plugin/plugin.json` / `> file 664` with
  # nothing wrong. See path_manifest's $NO_MODE_PATHS comment for the rule.
  cat "$tmp" >"$dst"
  rm -f "$tmp"
}

# --check-only: diffs a freshly-regenerated manifest file (in the throwaway
# pack_cwd copy, produced by a --force'd apm pack) against the one actually
# committed at the real plugin root. Real-mode syncs never need this -- there
# pack_cwd IS plugin_dir, so --force already refreshed the real file in place.
sync_plugin_manifest() {
  local plugin_dir="$1" pack_cwd="$2" rel="$3"
  local src="$pack_cwd/$rel" dst="$plugin_dir/$rel"

  # A manifest that is a symlink is not a cosmetic difference: apm pack opens it
  # for writing and reinject_mcp_servers redirects into it, and both follow the
  # link -- so a real sync silently rewrites whatever it points at instead of the
  # manifest. It has to be asserted against the real plugin root like this, not via
  # check_path_modes: that compares against a `cp -a` of this same root, which
  # reproduces the symlink on the expected side and reports the two as equal.
  if [[ -L "$dst" ]]; then
    echo "DRIFT $dst: is a symlink -- apm pack and the mcpServers re-injection both write THROUGH it, so a real sync would overwrite its target instead of the manifest. Replace it with a regular file." >&2
    FAIL=1
    return 0
  fi

  if [[ -f "$src" ]]; then
    if [[ ! -f "$dst" ]]; then
      echo "DRIFT $dst: missing (would be created by apm pack from apm.yml/.mcp.json)" >&2
      FAIL=1
    elif ! diff -q "$src" "$dst" >/dev/null 2>&1; then
      echo "DRIFT $dst: out of sync with apm.yml/.mcp.json" >&2
      # `|| true` for the same pipefail/set -e reason as check_dir's diff above.
      diff "$src" "$dst" 2>&1 | sed 's/^/    /' >&2 || true
      FAIL=1
    fi
  elif [[ -f "$dst" ]]; then
    echo "DRIFT $dst: stale, no longer produced by apm pack" >&2
    FAIL=1
  fi
}

# Runs entirely inside a backgrounded subshell (see the dispatch loop below), so
# FAIL here is that subshell's own copy -- it never touches the parent's FAIL
# and must be handed back via status_file instead.
sync_one() {
  local plugin_dir="${1%/}" status_file="$2" verified_file="$3"
  local apm_dir="$plugin_dir/.apm"
  FAIL=0
  # "This plugin's mirror was actually synced/checked." Flipped to 1 only at the
  # very bottom, so every early return below -- nonexistent directory, no .apm/,
  # apm pack failure, no bundle -- leaves it 0. --all compares the count of these
  # against the number of plugins marketplace.json declared (see the dispatch
  # loop's aggregation); an exit-status-only handshake cannot express "ran, but
  # verified nothing", which is exactly what the SKIP below is.
  echo 0 >"$verified_file"

  if [[ ! -d "$plugin_dir" ]]; then
    echo "FAIL $plugin_dir: plugin directory does not exist" >&2
    FAIL=1
    echo "$FAIL" >"$status_file"
    return 0
  fi

  if [[ ! -d "$apm_dir" ]]; then
    echo "SKIP $plugin_dir: no .apm/ directory" >&2
    echo "$FAIL" >"$status_file"
    return 0
  fi

  # Before the pack, not after: this reads the .apm/ source tree, and it is the
  # only report that survives apm's silent symlink filtering (see the header).
  check_apm_symlinks "$apm_dir"

  local name scratch bundle_dir pack_log pack_cwd
  name="$(basename "$plugin_dir")"
  scratch="$SCRATCH_ROOT/$name"
  mkdir -p "$scratch"
  pack_log="$(mktemp)"

  # --force always: in real mode it refreshes the real plugin.json in place
  # (pack_cwd IS plugin_dir there); in check mode it forces regeneration inside
  # the throwaway pack_cwd copy so sync_plugin_manifest below has a genuinely
  # fresh manifest to diff against the real one -- without --force, apm pack
  # would silently skip regenerating a plugin.json that already exists in the
  # copy (it was seeded from the real plugin_dir), so --check would always
  # compare the copy against itself and never see drift.
  local force_flag=(--force)
  if [[ "$CHECK" -eq 0 ]]; then
    pack_cwd="$plugin_dir"
  else
    pack_cwd="$SCRATCH_ROOT/$name.checkcopy"
    mkdir -p "$pack_cwd"
    cp -a "$plugin_dir/." "$pack_cwd/"
  fi

  if ! (cd "$pack_cwd" && apm pack --format plugin "${force_flag[@]+"${force_flag[@]}"}" -o "$scratch") >"$pack_log" 2>&1; then
    echo "FAIL $plugin_dir: apm pack failed:" >&2
    sed 's/^/    /' "$pack_log" >&2
    rm -f "$pack_log"
    FAIL=1
    echo "$FAIL" >"$status_file"
    return 0
  fi
  rm -f "$pack_log"

  bundle_dir="$(find "$scratch" -mindepth 1 -maxdepth 1 -type d | head -1)"
  if [[ -z "$bundle_dir" ]]; then
    echo "FAIL $plugin_dir: apm pack produced no bundle directory under $scratch" >&2
    FAIL=1
    echo "$FAIL" >"$status_file"
    return 0
  fi

  # Both modes run the identical real-mode mirror write; only the target differs.
  # In real mode that target IS the plugin root. In check mode it's the throwaway
  # pack_cwd copy, which then gets diffed against the plugin root below -- so
  # --check can only ever report what a real sync would actually change.
  local d
  for d in "${MIRROR_DIRS[@]}"; do
    sync_dir "$pack_cwd" "$bundle_dir" "$d"
  done
  sync_hooks_json "$pack_cwd" "$bundle_dir"
  if [[ "$CHECK" -eq 0 ]]; then
    reinject_mcp_servers "$plugin_dir" "$plugin_dir"
  else
    # Reinject into the throwaway copy too, so the manifest diff below compares
    # against what a real sync would actually produce (mcpServers included),
    # not apm's own Copilot-ecosystem output (which omits it).
    reinject_mcp_servers "$plugin_dir" "$pack_cwd"
    local -a checked_paths
    # $HOOKS_DIR_REL, not $HOOKS_REL: the manifest comparison has to see the whole
    # generated directory (see check_path_modes), and listing it recursively already
    # covers hooks/hooks.json.
    #
    # Neither generated plugin.json is listed here, and adding one back measures
    # nothing on any of the three axes this manifest compares. Mode: in check mode
    # the expected side is the seeded pack_cwd COPY of the real plugin root, where
    # apm pack rewrites a file that is already there and open-for-write preserves
    # the existing inode's mode -- so the expected mode is inherited from the actual
    # mode by construction. Verified: `chmod 600 plugins/bin/.claude-plugin/
    # plugin.json` left --check at exit 0 the entire time that entry was listed.
    # Type: a symlinked manifest survives the same `cp -a` as a symlink and apm pack
    # writes straight through it, so both sides record `symlink` -- also verified at
    # exit 0. Presence: sync_plugin_manifest already reports both directions, with a
    # message naming apm.yml as the thing to fix. A symlinked manifest IS a real
    # hazard (apm pack and reinject_mcp_servers both write through it, corrupting
    # whatever it points at), so it is asserted where it can actually be seen --
    # against the real plugin root, in sync_plugin_manifest.
    checked_paths=("${MIRROR_DIRS[@]}" "$HOOKS_DIR_REL" "$LEGACY_HOOKS_REL")
    for d in "${MIRROR_DIRS[@]}"; do
      check_dir "$plugin_dir" "$pack_cwd" "$d"
    done
    check_file "$plugin_dir" "$pack_cwd" "$HOOKS_REL" ".apm/hooks/"
    check_file "$plugin_dir" "$pack_cwd" "$LEGACY_HOOKS_REL" \
      ".apm/hooks/ (Claude Code convention-scans $HOOKS_REL, not the plugin root)"
    check_path_modes "$plugin_dir" "$pack_cwd" "${checked_paths[@]}"
    sync_plugin_manifest "$plugin_dir" "$pack_cwd" ".claude-plugin/plugin.json"
    sync_plugin_manifest "$plugin_dir" "$pack_cwd" ".github/plugin/plugin.json"
  fi
  echo 1 >"$verified_file"
  echo "$FAIL" >"$status_file"
}

# Each plugin's `apm pack` is an independent CLI invocation dominated by fixed
# process-startup cost, not by per-plugin work -- run them concurrently rather
# than paying that startup cost N times serially. Output is buffered per plugin
# (not streamed) so concurrent DRIFT/FAIL messages from different plugins never
# interleave; it's flushed in stable $@ order once every job has finished.
# Dispatch/throttling itself is scripts/lib/batch-run.sh's batch_run (shared
# with tests/run-tests.sh and tests/run-bats.sh) -- see that file for why this
# is batched rather than a rolling `wait -n` pool.
declare -a batch_args=()
for plugin_dir in ${plugin_dirs[@]+"${plugin_dirs[@]}"}; do
  name="$(basename "${plugin_dir%/}")"
  cmd="$(printf 'sync_one %q %q %q' "$plugin_dir" "$SCRATCH_ROOT/$name.status" \
    "$SCRATCH_ROOT/$name.verified")"
  batch_args+=("$name" "$cmd")
done
batch_run "$SCRATCH_ROOT" ${batch_args[@]+"${batch_args[@]}"}

declare -a unverified=()
for plugin_dir in ${plugin_dirs[@]+"${plugin_dirs[@]}"}; do
  name="$(basename "${plugin_dir%/}")"
  cat "$SCRATCH_ROOT/$name.log" >&2
  status="$(cat "$SCRATCH_ROOT/$name.status" 2>/dev/null || echo 1)"
  [[ "$status" -ne 0 ]] && FAIL=1
  # Missing file reads as 0 (unverified), matching the status file's `|| echo 1`
  # default: a job whose marker never got written did not verify anything.
  if [[ "$(cat "$SCRATCH_ROOT/$name.verified" 2>/dev/null || echo 0)" != "1" ]]; then
    unverified+=("$plugin_dir")
  fi
done

# --all's second floor, and the one the zero-plugin floor above cannot express.
# That floor rejects "the marketplace yielded no plugins"; this rejects "the
# marketplace yielded N and only M were actually verified". The gap between them
# is sync_one's SKIP path: a plugin directory with no .apm/ reports status 0 and
# checks nothing, so --all printed one SKIP line among the noise and exited 0
# having verified fewer plugins than it listed. --all is a pre-push gate over a
# GENERATED work list, so "checked fewer than declared" has to be a failure.
#
# There is no legitimate state in this repo where a listed local plugin lacks
# .apm/: ADR-0015 made .apm/ the sole authoring source for every plugin here, and
# ADR-0017's mirror is defined as that directory's compiled output, so a local
# marketplace entry without one is drift in one of the two -- either the directory
# lost its .apm/, or marketplace.json still lists a package that is no longer one.
# Both need a human, and neither is fixed by re-running the sync, so this is
# reported separately from the drift hint below rather than folded into it.
#
# SKIP stays a skip when plugin directories are named EXPLICITLY on the command
# line: there the caller chose the work list and a non-apm directory is their
# business, not a generated file's drift.
UNVERIFIED=0
if [[ "$ALL" -eq 1 ]] && [[ ${#unverified[@]} -gt 0 ]]; then
  echo "Error: --all verified $(( ${#plugin_dirs[@]} - ${#unverified[@]} )) of the ${#plugin_dirs[@]} local plugin entries $MARKETPLACE declares; unverified: ${unverified[*]}. A listed plugin that cannot be checked (typically: its .apm/ is gone, which sync_one skips) is drift, not a pass -- restore its .apm/, or drop the entry from root apm.yml's marketplace.packages[] and recompile." >&2
  UNVERIFIED=1
fi

if [[ "$FAIL" -ne 0 ]]; then
  if [[ "$CHECK" -eq 1 ]]; then
    if [[ "$ALL" -eq 1 ]]; then
      echo "Plugin content mirror is out of sync with .apm/. Fix: bash scripts/sync-plugin-content.sh --all" >&2
    else
      echo "Plugin content mirror is out of sync with .apm/. Fix: bash scripts/sync-plugin-content.sh $*" >&2
    fi
  fi
  exit 1
fi

[[ "$UNVERIFIED" -eq 0 ]] || exit 1