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holocron/plugins/bin/skills/diagnose/SKILL.md
Claude Code AI - Gitea MCP 598a7c326a refactor(skills): retrofit the corpus to the ADR-0020 context contract (#129)
Retrofits all 39 skills to ADR-0020's description/body context contract, then fixes what six rounds of independent review found in that retrofit — including four ways the hot gate itself failed open.

Closes #99, #107, #108, #110, #111, #114, #115, #120.

## The retrofit (waves 1-5)

| | Start | Now |
|---|---|---|
| Description FAILs (>400 chars) | 26 | **0** |
| Body FAILs (>900 words, body-only) | 9 | **0** |
| Dangling routing targets | 2 | **0** |
| `Kyberforge.CompositionNote` | 10 | **0** |
| Preload tax | 21,005 chars | **~10,500** |

Under the 12,000-char success criterion. Per-wave detail is on #99.

## The review fixes

**The gate failed open four ways, three of them found after the retrofit shipped.** An unrecognised follower token made a dangling target vanish. A skill directory with no `SKILL.md` resolved as a valid target, so a commit could be green locally and red in a fresh clone — three existing fixtures were relying on that, one of which made the install-leak A/B pass vacuously. Then the free-standing `/name` sweep turned out to be gated on the sentence carrying a boundary marker, so route notation in any other sentence was invisible — not an ERROR, not a SUGGESTION, not an INFO — which left the documented "`/name` always blocks" promise false from a second direction. All four fixed and pinned.

**Two checks were silently not running.** `validate-provenance.sh` checks 7-8 were dead across nine skills. Waking them exposed a deeper problem: they assume `Research doc:` names a source index, but 30 of 121 entries point at topic content documents, so every new check-7 INFO was a false positive and check 8 was saved from a false-FAIL flood only by an *unannounced* skip. Checks 7/8 are now scoped to source indexes and every skip announces itself (#121).

**The retrofit's own anti-goal, four times.** ADR-0020 warns that a blunt gate gets satisfied by deleting content rather than relocating it. `diagnose` and `skill-audit` relocated prose and then read it unconditionally; `prototype` and `vale-config` deleted rules outright that survived nowhere. All four addressed.

## Verification

- `bash tests/run-tests.sh --strict` — 24 suites, 0 skipped, 0 failed
- `bash tests/run-bats.sh` — 325 tests, 0 failures
- `pre-commit run --all-files` — 17/17
- `pre-commit run --hook-stage pre-push --all-files` — 16/16, with `apm marketplace check` and `apm pack --check-clean` run against the remote, not skipped
- `scripts/skill-size-check.sh` over all 39 skills — rc 0, 0 ERROR/FAIL, SUGGESTION-only
- Preload tax measured at **10,498 chars**, max description 390 — both inside budget
- Every new test proven non-vacuous by a deliberate mutation of the behaviour it covers

**Per-commit sync, stated accurately:** the ten commits from the latest review round each pass `check-plugin-content-sync` in isolation, verified by checking each out in a detached worktree with a clean between. The earlier gitea window (`dfacf05..bedbd1d`, nine commits) does **not** — its mirror was regenerated in one batch at `bbc7300`. An earlier revision of this description claimed the property held for every commit; it does not, and a bisect through that window lands on a red commit. **Squash-merge** to collapse it, or accept that this range is not bisectable.

## Version bump

Six plugins and the catalog take a **patch**, not a minor. The branch is **89 commits — 40 `fix` / 30 `refactor` / 12 `docs` / 5 `chore` / 2 `test` — zero `feat`, zero `!`, zero `BREAKING CHANGE`** — and adds no skill, agent, command or hook. (Two earlier revisions of this section cited a stale histogram, most recently 78 commits; the figures above are measured at HEAD.) Both rules this repo ships (`forge/references/version-bump.md`, landing in this PR, and `git-commits/references/conventional-commits-spec.md`) make that a patch, and the catalog set is unchanged at 7 entries.

Not settled by that: four published files were removed from the installed tree, three moved, and `caveman` gained `disable-model-invocation`, retiring its old triggers. Under a strict reading those are major-class and currently ship under `refactor:` with no marker. Whether the deployed skill surface is a public contract is written down nowhere — worth deciding, but it outlives this PR.

## Deliberately not in scope

#112 (cherry-pick ownership, now resolved in favour of `git-commits`), #113 (`rtk git` normalisation), #116 (research fan-out), #101 (audit-skill merge), #122 (non-spec skill-root files), #123 (no PRD producer) stay open. #117 is the one worth reading: the contract's remedy is to move prose into `references/`, which is exactly where neither the size gate nor Vale looks — and the blind spot is wider than #117 currently records, since there is no root `.vale.ini` at all, so every ADR, `CONTEXT.md` and `README.md` is unlinted too.

That blind spot let this branch carry two `level: error` `Kyberforge.SentenceOpenerThereIs` violations into `references/` files it created — `provider-adapter-author/references/provider-matrix.md:31` and `agent-audit/references/finding-criteria.md:95`. Both are reworded in `afadaae`, confirmed by routing each file through the audit's own `vale-wrap.sh` (1 error each before, 0 after). Five further occurrences sit in `references/` files already on `main`; those are the pre-existing corpus and stay with #117, which is the real fix.

Also unfixed and not this PR's: `apm install` appends a duplicate `SessionStart` entry to `.claude/settings.json`, so a fresh clone cannot get pre-push green without an edit AGENTS.md warns against. Reproduces identically on `main`.

Co-authored-by: Defame1297 <gitea@rkdr.net>
Reviewed-on: https://git.dev.rkdr.net/Defame1297/holocron/pulls/129
Co-authored-by: Claude Code AI - Gitea MCP <claude@noreply.git.dev.rkdr.net>
Co-committed-by: Claude Code AI - Gitea MCP <claude@noreply.git.dev.rkdr.net>
2026-09-01 13:47:46 +00:00

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---
name: diagnose
description: >
Use when the user says "diagnose this" or "debug this", reports something
broken, throwing, or failing, or says something got slow. Not filing or
triaging a reported bug -> `triage`. Not test-first feature work -> `tdd`.
---
# Diagnose
A discipline for hard bugs. Skip phases only when explicitly justified.
When exploring the codebase, use the project's domain glossary to get a clear mental model of the relevant modules, and check ADRs in the area you're touching.
## Phase 1 — Build a feedback loop
**This is the skill.** Everything else is mechanical. If you have a fast, deterministic, agent-runnable pass/fail signal for the bug, you will find the cause — bisection, hypothesis-testing, and instrumentation all just consume that signal. If you don't have one, no amount of staring at code will save you.
Spend disproportionate effort here. **Be aggressive. Be creative. Refuse to give up.**
**If you do not yet have such a signal, read `references/feedback-loops.md`** — ten ways to build one ordered by cost, and what to ask the user for when the bug resists reproduction entirely.
**If you do have one, it is probably not sharp enough yet.** Make it faster and more deterministic, and make it assert on the exact symptom rather than "didn't crash" — a 30-second flaky loop is barely better than no loop. If it stays slow or intermittent after that, read that file's "Iterate on the loop itself" and "Intermittent bugs" sections.
Do not proceed to Phase 2 until you have a loop you believe in. If you cannot build one, stop and say so explicitly, listing what you tried — never hypothesise without a signal.
## Phase 2 — Reproduce
Run the loop. Watch the bug appear.
Confirm:
- [ ] The loop produces the failure mode the **user** described — not a different failure that happens to be nearby. Wrong bug = wrong fix.
- [ ] The failure is reproducible across multiple runs. If it is intermittent, `references/feedback-loops.md` defines the rate high enough to debug against — go back to Phase 1 and raise it.
- [ ] You have captured the exact symptom (error message, wrong output, slow timing) so later phases can verify the fix actually addresses it.
Do not proceed until you reproduce the bug.
## Phase 3 — Hypothesise
Generate **3–5 ranked hypotheses** before testing any of them. Single-hypothesis generation anchors on the first plausible idea.
Each hypothesis must be **falsifiable**: state the prediction it makes.
> Format: "If <X> is the cause, then <changing Y> will make the bug disappear / <changing Z> will make it worse."
If you cannot state the prediction, the hypothesis is a vibe — discard or sharpen it.
**Show the ranked list to the user before testing.** They often have domain knowledge that re-ranks instantly ("we just deployed a change to #3"), or know hypotheses they've already ruled out. Cheap checkpoint, big time saver. Don't block on it — proceed with your ranking if the user is AFK.
## Phase 4 — Instrument
Each probe must map to a specific prediction from Phase 3. **Change one variable at a time.**
Tool preference:
1. **Debugger / REPL inspection** if the env supports it. One breakpoint beats ten logs.
2. **Targeted logs** at the boundaries that distinguish hypotheses.
3. Never "log everything and grep".
**Tag every debug log** with a unique prefix, e.g. `[DEBUG-a4f2]`. Cleanup at the end becomes a single grep. Untagged logs survive; tagged logs die.
**Perf branch.** For performance regressions, logs are usually wrong. Instead: establish a baseline measurement (timing harness, `performance.now()`, profiler, query plan), then bisect. Measure first, fix second.
## Phase 5 — Fix + regression test
Write the regression test **before the fix** — but only at a **correct seam**: one where the test exercises the real bug pattern as it occurs at the call site. If the available seam looks too shallow, or you cannot tell whether it is, read `references/regression-seams.md`.
**If no correct seam exists, that itself is the finding.** Note it and carry it into Phase 6 — the architecture is preventing the bug from being locked down.
At a correct seam:
1. Turn the Phase 1 loop into a failing test at that seam, narrowed to the symptom captured in Phase 2.
2. Watch it fail.
3. Apply the fix.
4. Watch it pass.
5. Re-run the Phase 1 feedback loop against the original, un-narrowed scenario.
## Phase 6 — Cleanup + post-mortem
Required before declaring done:
- [ ] Original repro no longer reproduces (re-run the Phase 1 loop)
- [ ] Regression test passes (or absence of seam is documented)
- [ ] All `[DEBUG-...]` instrumentation removed (`grep` the prefix)
- [ ] Throwaway prototypes deleted (or moved to a clearly-marked debug location)
- [ ] The hypothesis that turned out correct is stated in the commit / PR message — so the next debugger learns
**Then ask: what would have prevented this bug?** If the answer involves architectural change (no good test seam, tangled callers, hidden coupling) hand off to the `/improve-codebase-architecture` skill with the specifics. Make the recommendation **after** the fix is in, not before — you have more information now than when you started.